TCONS_00045395 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045395
Unique NameTCONS_00045395
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length488

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045395 ID=TCONS_00045395|Name=TCONS_00045395|organism=Clytia hemisphaerica|type=transcript|length=488bp
TTAATCTAAATCTAATCAATATTTGAAATGCTTTTCATCTCTTCTGTTTA
GGGAGGACAGGACCAACGAAGTCTCTGACATGAATGAAAACGAGATAACA
TACAAACAGTTGTACTCGTACACGTTTGATCCAAATATGTCTTGTCCAGG
ATGTTCTGAAAGCGACATGATTTATACTCCAAATATACCATTCATGAGTA
TTGTGAAAATTCTGGCTGGGGCAAATGTAACTGAGCATTCCGATCCTTCA
AAAACAGAGCCAATGAAATTctttggtcaaattttcagtGCAGCTTTGGA
CCAAGAAGGAGCAGATATTTTCTATCATCATAACATCAGTCAATTACTAT
GGGGATATCATGATAACTTTTTGGCTGCAATCCAGGCGGAATCTTCTTCA
CTTCCTCCTTCCTACTTAAAAGCACTCAATATCAGCTTCCCAAGTAACCT
TGATACTACTATCCAATTGCAGGTAttctttcaattat
Run BLAST on NCBI

protein sequence of TCONS_00045395-protein

>TCONS_00045395-protein ID=TCONS_00045395-protein|Name=TCONS_00045395-protein|organism=Clytia hemisphaerica|type=polypeptide|length=136bp
MNENEITYKQLYSYTFDPNMSCPGCSESDMIYTPNIPFMSIVKILAGANV
TEHSDPSKTEPMKFFGQIFSAALDQEGADIFYHHNISQLLWGYHDNFLAA
IQAESSSLPPSYLKALNISFPSNLDTTIQLQVFFQL
Run BLAST on NCBI

transcript from alignment at sc0007714:127..752+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045395 ID=TCONS_00045395|Name=TCONS_00045395|organism=Clytia hemisphaerica|type=transcript|length=626bp|location=Sequence derived from alignment at sc0007714:127..752+ (Clytia hemisphaerica)
TTAATCTAAATCTAATCAATATTTGAAATGCTTTTCATCTCTTCTGTTTA
GGGAGGACAGGACCAACGAAGTCTCTGACATGAATGAAAACGAGATAACA
TACAAACAGTTGTACTCGTACACGTTTGATCCAAATATGTCTTGTCCAGG
ATGTTCTGAAAGCGACATGATTTATACTCCAAATATACCATTCATGGTAA
TGACATTCATTTGACAATTGGAGCACCTAAGAATTTGAGCAATCCCTcct
taaatttgatatttgattTTACGTAAAAACGGAtataatttgatttttgt
tgttaATTCAGGTTAATTACTATTATATCTTTAGAGTATTGTGAAAATTC
TGGCTGGGGCAAATGTAACTGAGCATTCCGATCCTTCAAAAACAGAGCCA
ATGAAATTctttggtcaaattttcagtGCAGCTTTGGACCAAGAAGGAGC
AGATATTTTCTATCATCATAACATCAGTCAATTACTATGGGGATATCATG
ATAACTTTTTGGCTGCAATCCAGGCGGAATCTTCTTCACTTCCTCCTTCC
TACTTAAAAGCACTCAATATCAGCTTCCCAAGTAACCTTGATACTACTAT
CCAATTGCAGGTAttctttcaattat

Coding sequence (CDS) from alignment at sc0007714:127..752+

>TCONS_00045395 ID=TCONS_00045395|Name=TCONS_00045395|organism=Clytia hemisphaerica|type=CDS|length=816bp|location=Sequence derived from alignment at sc0007714:127..752+ (Clytia hemisphaerica)
ATGAATGAAAACGAGATAACATACAAACAGTTGTACTCGTACACGTTTGA
TCCAAATATGTCTTGTCCAGGATGTTCTGAAAGCGACATGATTTATACTC
CAAATATACCATTCATGAGTATTGTGAAAATTCTGGCTGGGGCAAATGTA
ACTGAGCATTCCGATCCTTCAAAAACAGAGCCAATGAAATTctttggtca
aattttcagtGCAGCTTTGGACCAAGAAGGAGCAGATATTTTCTATCATC
ATAACATCAGTCAATTACTATGGGGATATCATGATAACTTTTTGGCTGCA
ATCCAGGCGGAATCTTCTTCACTTCCTCCTTCCTACTTAAAAGCACTCAA
TATCAGCTTCCCAAGTAACCTTGATACTACTATCCAATTGCAGGTAttct
ttcaattaATGAATGAAAACGAGATAACATACAAACAGTTGTACTCGTAC
ACGTTTGATCCAAATATGTCTTGTCCAGGATGTTCTGAAAGCGACATGAT
TTATACTCCAAATATACCATTCATGAGTATTGTGAAAATTCTGGCTGGGG
CAAATGTAACTGAGCATTCCGATCCTTCAAAAACAGAGCCAATGAAATTc
tttggtcaaattttcagtGCAGCTTTGGACCAAGAAGGAGCAGATATTTT
CTATCATCATAACATCAGTCAATTACTATGGGGATATCATGATAACTTTT
TGGCTGCAATCCAGGCGGAATCTTCTTCACTTCCTCCTTCCTACTTAAAA
GCACTCAATATCAGCTTCCCAAGTAACCTTGATACTACTATCCAATTGCA
GGTAttctttcaatta
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028975XLOC_028975Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045395-proteinTCONS_00045395-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045395-exon-sc0007714-1491911889:127..322TCONS_00045395-exon-sc0007714-1491911889:127..322Clytia hemisphaericaexon
TCONS_00045395-exon-sc0007714-1510915933:127..322TCONS_00045395-exon-sc0007714-1510915933:127..322Clytia hemisphaericaexon
TCONS_00045395-exon-sc0007714-1575043694:127..322TCONS_00045395-exon-sc0007714-1575043694:127..322Clytia hemisphaericaexon
TCONS_00045395-exon-sc0007714-1491911889:461..752TCONS_00045395-exon-sc0007714-1491911889:461..752Clytia hemisphaericaexon
TCONS_00045395-exon-sc0007714-1510915933:461..752TCONS_00045395-exon-sc0007714-1510915933:461..752Clytia hemisphaericaexon
TCONS_00045395-exon-sc0007714-1575043694:461..752TCONS_00045395-exon-sc0007714-1575043694:461..752Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0007714supercontigsc0007714:127..752 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
85.5789	80.3529	61.0465	54.7943	45.7859	34.6901	49.0454	44.5383	45.3268	53.8882	58.2314	40.5656	50.5731	52.6085	107.009	120.649	84.5765	94.1242	40.9578	55.1656	62.7024	62.4274	71.1502	85.2316	87.923	84.3178	58.4113	48.3818	238.665	217.422
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002159CD36_fam
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045395 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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