TCONS_00045393 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045393
Unique NameTCONS_00045393
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length389

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045393 ID=TCONS_00045393|Name=TCONS_00045393|organism=Clytia hemisphaerica|type=transcript|length=389bp
attcatGACGTCAAGCATTTAGAGAGGTTGGTCAAAGGAGTGTAGGAATT
CAAATACAGGCTGGCtaaaagatgacgtcatttatttACTGTAGCTTGTT
TTTATATCGATAGGTATTTCCATCGCCACTATGGGAAAAAGTTCTACTAG
GgccactgagacaggggtgttaaaacCCCTGGTAAGTAggtaaaagttga
aaaaatctgcGCATGAAAAGTGAGCTTTCTCCTAAGATAGCCTTCCGCCC
TTGTTTTAGCCTCCTGATTGCCCCCTTTTTACTTTCGATGTTTTACTGCC
GACCTCACAAAATGTGAGATTAGTCAATGACACGATTTTAAAGATTAGAA
GCGACTAATTTATGGGCTCATTACGTGGTTACTTTAAAG
Run BLAST on NCBI

transcript from alignment at sc0007703:368..756

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045393 ID=TCONS_00045393|Name=TCONS_00045393|organism=Clytia hemisphaerica|type=transcript|length=389bp|location=Sequence derived from alignment at sc0007703:368..756 (Clytia hemisphaerica)
CTTTAAAGTAACCACGTAATGAGCCCATAAATTAGTCGCTTCTAATCTTT
AAAATCGTGTCATTGACTAATCTCACATTTTGTGAGGTCGGCAGTAAAAC
ATCGAAAGTAAAAAGGGGGCAATCAGGAGGCTAAAACAAGGGCGGAAGGC
TATCTTAGGAGAAAGCTCACTTTTCATGCgcagattttttcaacttttac
cTACTTACCAGGGgttttaacacccctgtctcagtggcCCTAGTAGAACT
TTTTCCCATAGTGGCGATGGAAATACCTATCGATATAAAAACAAGCTACA
GTaaataaatgacgtcatcttttaGCCAGCCTGTATTTGAATTCCTACAC
TCCTTTGACCAACCTCTCTAAATGCTTGACGTCatgaat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028973XLOC_028973Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045393-exon-sc0007703-1491911889:368..756TCONS_00045393-exon-sc0007703-1491911889:368..756Clytia hemisphaericaexon
TCONS_00045393-exon-sc0007703-1510915933:368..756TCONS_00045393-exon-sc0007703-1510915933:368..756Clytia hemisphaericaexon
TCONS_00045393-exon-sc0007703-1575043694:368..756TCONS_00045393-exon-sc0007703-1575043694:368..756Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0007703supercontigsc0007703:368..756 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.197099	0	0	0	0.265798	0	0.253401	0	0.332182	0.205731	0	0	1.96626	1.08906	0.783434	0.960851	0.591845	0.454966	1.25712	0.438495	0	0	0.451979	0.205457	1.2697	1.32204	1.08105	1.15372	3.93775	4.6806
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045393 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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