TCONS_00045391 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045391
Unique NameTCONS_00045391
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length531

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045391 ID=TCONS_00045391|Name=TCONS_00045391|organism=Clytia hemisphaerica|type=transcript|length=531bp
GAAGAGAAAACGAAGGACGGAATCTCAACGTGAAGGGTgcatttcttaag
aaacatgcTGCAATACTGAAGAAATATAAGCCATACATACGAACAGATGA
TATACCAGAAGACTTGAAAGAACCTTTTTATGACGATCCTTTTGACTTAG
CTATCGAGGATCTAGAAAAGATAGGGGATGATTTATTTTCGGACAACAAT
TCCATGAACGATTCGACAAAATGAAGTGCAAATGGATATTTAGAGTTTTT
AAGCGGTAATCAATAgcttttaaaattcttaaacGTTGAAAGATTTACCA
TCGCTTTTGAGTTGATTCCATCTCCATAATAACTTCCCATCGCCTAACAA
ATATCTTCCGATAAAGTGATATGAGGTTTTGGCTCTCGATGTCATATCCT
ACTTTACATGAGAGCttgcacgctttttttataaggaaaactttaaaaaa
cacaAACTTCAATTTTGGCAAGAAGAAATTATCCTATCGAATAAAATTTT
TCGAATATGGCTTTCTAGAGTcactttttca
Run BLAST on NCBI

transcript from alignment at sc0007698:250..780

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045391 ID=TCONS_00045391|Name=TCONS_00045391|organism=Clytia hemisphaerica|type=transcript|length=531bp|location=Sequence derived from alignment at sc0007698:250..780 (Clytia hemisphaerica)
tgaaaaagtgACTCTAGAAAGCCATATTCGAAAAATTTTATTCGATAGGA
TAATTTCTTCTTGCCAAAATTGAAGTTtgtgttttttaaagttttcctta
taaaaaaagcgtgcaaGCTCTCATGTAAAGTAGGATATGACATCGAGAGC
CAAAACCTCATATCACTTTATCGGAAGATATTTGTTAGGCGATGGGAAGT
TATTATGGAGATGGAATCAACTCAAAAGCGATGGTAAATCTTTCAACgtt
taagaattttaaaagcTATTGATTACCGCTTAAAAACTCTAAATATCCAT
TTGCACTTCATTTTGTCGAATCGTTCATGGAATTGTTGTCCGAAAATAAA
TCATCCCCTATCTTTTCTAGATCCTCGATAGCTAAGTCAAAAGGATCGTC
ATAAAAAGGTTCTTTCAAGTCTTCTGGTATATCATCTGTTCGTATGTATG
GCTTATATTTCTTCAGTATTGCAgcatgtttcttaagaaatgcACCCTTC
ACGTTGAGATTCCGTCCTTCGTTTTCTCTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028971XLOC_028971Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045391-exon-sc0007698-1491911889:250..780TCONS_00045391-exon-sc0007698-1491911889:250..780Clytia hemisphaericaexon
TCONS_00045391-exon-sc0007698-1510915933:250..780TCONS_00045391-exon-sc0007698-1510915933:250..780Clytia hemisphaericaexon
TCONS_00045391-exon-sc0007698-1575043694:250..780TCONS_00045391-exon-sc0007698-1575043694:250..780Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0007698supercontigsc0007698:250..780 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.76287	0.859538	0.998005	0.488196	5.05182	3.28754	1.69983	2.12182	2.50684	2.3001	0.223253	0.587031	0.439661	0.228296	0	0.201421	0.330845	0.254329	0	0	0	0.311763	1.26329	1.26337	1.41954	1.58363	0	0.161234	0	1.12135
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045391 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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