TCONS_00045388 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045388
Unique NameTCONS_00045388
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length312

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045388 ID=TCONS_00045388|Name=TCONS_00045388|organism=Clytia hemisphaerica|type=transcript|length=312bp
cttactgcTTCAGCTTGTTCTCTAAATTCTTCGAAAAGTTTGTAATAGTT
NAATAAAAACTTACTGCTTCAGCTTGTTCTCTAAATTCTTCGAAAAGTTT
GTAATAGTTCAAAGTGGCAATCTTTCCTTTCCCTTTCATTAATTCGAGAA
GGGCCTTGGCGGCGTCAGAACGTCGTTTGCGGTCGGTGATACTGAGTCCT
GTGGTCAGGATGTTGATATCGATCATGCCAGTCTTGGGGTCCATTGCAGA
CTGTTTCAAAGCCTCCCGCTGAAGTCTAAAATGTATACAAAACATGAAAT
TATTTATATTAT
Run BLAST on NCBI

protein sequence of TCONS_00045388-protein

>TCONS_00045388-protein ID=TCONS_00045388-protein|Name=TCONS_00045388-protein|organism=Clytia hemisphaerica|type=polypeptide|length=102bp
NINNFMFCIHFRLQREALKQSAMDPKTGMIDINILTTGLSITDRKRRSDA
AKALLELMKGKGKIATLNYYKLFEEFREQAEAVSFYXTITNFSKNLENKL
KQ
Run BLAST on NCBI

transcript from alignment at sc0007690:133..444

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045388 ID=TCONS_00045388|Name=TCONS_00045388|organism=Clytia hemisphaerica|type=transcript|length=312bp|location=Sequence derived from alignment at sc0007690:133..444 (Clytia hemisphaerica)
ATAATATAAATAATTTCATGTTTTGTATACATTTTAGACTTCAGCGGGAG
GCTTTGAAACAGTCTGCAATGGACCCCAAGACTGGCATGATCGATATCAA
CATCCTGACCACAGGACTCAGTATCACCGACCGCAAACGACGTTCTGACG
CCGCCAAGGCCCTTCTCGAATTAATGAAAGGGAAAGGAAAGATTGCCACT
TTGAACTATTACAAACTTTTCGAAGAATTTAGAGAACAAGCTGAAGCAGT
AAGTTTTTATTNAACTATTACAAACTTTTCGAAGAATTTAGAGAACAAGC
TGAAgcagtaag

Coding sequence (CDS) from alignment at sc0007690:133..444

>TCONS_00045388 ID=TCONS_00045388|Name=TCONS_00045388|organism=Clytia hemisphaerica|type=CDS|length=309bp|location=Sequence derived from alignment at sc0007690:133..444 (Clytia hemisphaerica)
AATATAAATAATTTCATGTTTTGTATACATTTTAGACTTCAGCGGGAGGC
TTTGAAACAGTCTGCAATGGACCCCAAGACTGGCATGATCGATATCAACA
TCCTGACCACAGGACTCAGTATCACCGACCGCAAACGACGTTCTGACGCC
GCCAAGGCCCTTCTCGAATTAATGAAAGGGAAAGGAAAGATTGCCACTTT
GAACTATTACAAACTTTTCGAAGAATTTAGAGAACAAGCTGAAGCAGTAA
GTTTTTATTNAACTATTACAAACTTTTCGAAGAATTTAGAGAACAAGCTG
AAgcagtaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028968XLOC_028968Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045388-proteinTCONS_00045388-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045388-exon-sc0007690-1491911889:133..444TCONS_00045388-exon-sc0007690-1491911889:133..444Clytia hemisphaericaexon
TCONS_00045388-exon-sc0007690-1510915933:133..444TCONS_00045388-exon-sc0007690-1510915933:133..444Clytia hemisphaericaexon
TCONS_00045388-exon-sc0007690-1575043694:133..444TCONS_00045388-exon-sc0007690-1575043694:133..444Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0007690supercontigsc0007690:133..444 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
215.205	188.705	134.114	113.664	39.9336	40.3625	39.3992	42.6872	42.0729	61.4587	39.42	32.5635	21.2971	21.6416	21.1162	26.6476	56.3498	51.3982	8.41864	11.4906	31.9599	33.1264	70.669	66.402	41.4052	48.501	14.6364	13.1009	33.2494	32.7077
Blast
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BLAST of TCONS_00045388 vs. Swiss-Prot (Human)
Match: MCM4 (DNA replication licensing factor MCM4 OS=Homo sapiens GN=MCM4 PE=1 SV=5)

HSP 1 Score: 84.7297 bits (208), Expect = 1.060e-19
Identity = 40/70 (57.14%), Postives = 54/70 (77.14%), Query Frame = -3 
Query:   68 RLQREALKQSAMDPKTGMIDINILTTGLSITDRKRRSDAAKALLELMKGKGKIATLNYYKLFEEFREQAE 277
            RL REALKQSA DP+TG++DI+ILTTG+S T RKR+ + A+AL +L+  KGK   L Y +LFE+ R Q++
Sbjct:  763 RLHREALKQSATDPRTGIVDISILTTGMSATSRKRKEELAEALKKLILSKGKTPALKYQQLFEDIRGQSD 832
The following BLAST results are available for this feature:
BLAST of TCONS_00045388 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MCM41.060e-1957.14DNA replication licensing factor MCM4 OS=Homo sapi... [more]
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