TCONS_00045378 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045378
Unique NameTCONS_00045378
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length811

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045378 ID=TCONS_00045378|Name=TCONS_00045378|organism=Clytia hemisphaerica|type=transcript|length=811bp
TTGCAAATTGGCAAATGCTGGAAAAATAAATGATCTTGGAGAATCCGCCA
GGTTTTCTTCAGCCAAAACGTCTCACTAATTAAGGTAAAACGATTCAAAC
TTGAGATCGAAAGTCTAGCAAGTGGAAGGTCAAGGAAGGATACAAAAGAC
GCCTTTTCACTTCCTTGTCAGGTTCCAATACttgtaataaaaaatatcaT
GACCTTTAGAAAATTCAACAGAAACTCAAAcgttcaaaatgagatgaaag
gTCATAATCAACAAAggaattgaatttctcaaaataaaaatcttcgcaat
ataaattttataaaaacacgctcAACCCATCACGATTCAAAACAAtataa
aatattataatgtGTCGGGTATATAAATAATCGTCACCTTTGAACTAGTT
ACCAACCCATTTTAACTATTCTAGAAATTGTATGTATGATAAACTGGCAG
CACCTTTGCTGGAGGTTAAAACTAGGCCATTTAGTAAACGtggctttatt
tgaaaatagaatCCAAGAAAAGTTGGACCGAGATTTCCTATACAAAAGGA
CCTCCACACAATATTCCAACCTTATAAAGATTGTTGAATTTTCACCCGTT
TCAAGTCTTAAGTAAAGAAGATCAATGTAGCCTGAAAATAACTGATCGGC
TGCAATAGACGTGGCTAGAAAGTCGTAAGTTGCATTATTCCGGTAGTCTT
TTGACCTACGATCAGCGCCGAAATaattggcacaaaaggggaattccctc
aaaactttaaaaccgcaagtgatttttaagccCTTTAAAGTAgagttaga
aagtagagttt
Run BLAST on NCBI

protein sequence of TCONS_00045378-protein

>TCONS_00045378-protein ID=TCONS_00045378-protein|Name=TCONS_00045378-protein|organism=Clytia hemisphaerica|type=polypeptide|length=136bp
TLLSNSTLKGLKITCGFKVLREFPFCANYFGADRRSKDYRNNATYDFLAT
SIAADQLFSGYIDLLYLRLETGENSTIFIRLEYCVEVLLYRKSRSNFSWI
LFSNKATFTKWPSFNLQQRCCQFIIHTISRIVKMGW
Run BLAST on NCBI

transcript from alignment at sc0007647:1..811

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045378 ID=TCONS_00045378|Name=TCONS_00045378|organism=Clytia hemisphaerica|type=transcript|length=811bp|location=Sequence derived from alignment at sc0007647:1..811 (Clytia hemisphaerica)
aaactctactttctaactcTACTTTAAAGggcttaaaaatcacttgcggt
tttaaagttttgagggaattccccttttgtgccaattATTTCGGCGCTGA
TCGTAGGTCAAAAGACTACCGGAATAATGCAACTTACGACTTTCTAGCCA
CGTCTATTGCAGCCGATCAGTTATTTTCAGGCTACATTGATCTTCTTTAC
TTAAGACTTGAAACGGGTGAAAATTCAACAATCTTTATAAGGTTGGAATA
TTGTGTGGAGGTCCTTTTGTATAGGAAATCTCGGTCCAACTTTTCTTGGa
ttctattttcaaataaagccaCGTTTACTAAATGGCCTAGTTTTAACCTC
CAGCAAAGGTGCTGCCAGTTTATCATACATACAATTTCTAGAATAGTTAA
AATGGGTTGGTAACTAGTTCAAAGGTGACGATTATTTATATACCCGACac
attataatattttataTTGTTTTGAATCGTGATGGGTTgagcgtgttttt
ataaaatttatattgcgaagatttttattttgagaaattcaattccTTTG
TTGATTATGAcctttcatctcattttgaacgTTTGAGTTTCTGTTGAATT
TTCTAAAGGTCAtgatattttttattacaaGTATTGGAACCTGACAAGGA
AGTGAAAAGGCGTCTTTTGTATCCTTCCTTGACCTTCCACTTGCTAGACT
TTCGATCTCAAGTTTGAATCGTTTTACCTTAATTAGTGAGACGTTTTGGC
TGAAGAAAACCTGGCGGATTCTCCAAGATCATTTATTTTTCCAGCATTTG
CCAATTTGCAA

Coding sequence (CDS) from alignment at sc0007647:1..811

>TCONS_00045378 ID=TCONS_00045378|Name=TCONS_00045378|organism=Clytia hemisphaerica|type=CDS|length=411bp|location=Sequence derived from alignment at sc0007647:1..811 (Clytia hemisphaerica)
actctactttctaactcTACTTTAAAGggcttaaaaatcacttgcggttt
taaagttttgagggaattccccttttgtgccaattATTTCGGCGCTGATC
GTAGGTCAAAAGACTACCGGAATAATGCAACTTACGACTTTCTAGCCACG
TCTATTGCAGCCGATCAGTTATTTTCAGGCTACATTGATCTTCTTTACTT
AAGACTTGAAACGGGTGAAAATTCAACAATCTTTATAAGGTTGGAATATT
GTGTGGAGGTCCTTTTGTATAGGAAATCTCGGTCCAACTTTTCTTGGatt
ctattttcaaataaagccaCGTTTACTAAATGGCCTAGTTTTAACCTCCA
GCAAAGGTGCTGCCAGTTTATCATACATACAATTTCTAGAATAGTTAAAA
TGGGTTGGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028958XLOC_028958Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045378-proteinTCONS_00045378-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045378-exon-sc0007647-1491911889:1..811TCONS_00045378-exon-sc0007647-1491911889:1..811Clytia hemisphaericaexon
TCONS_00045378-exon-sc0007647-1510915933:1..811TCONS_00045378-exon-sc0007647-1510915933:1..811Clytia hemisphaericaexon
TCONS_00045378-exon-sc0007647-1575043694:1..811TCONS_00045378-exon-sc0007647-1575043694:1..811Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0007647supercontigsc0007647:1..811 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
7.4454	7.97854	3.84907	4.08286	16.6819	11.6574	15.4046	19.4087	5.18311	6.38926	5.6501	3.36388	3.81192	3.86621	3.16562	2.96097	4.46825	4.01624	1.22124	2.86535	7.37586	7.0569	9.03924	8.88573	4.39367	7.88056	7.93428	7.11821	12.8123	9.67361
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045378 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top