TCONS_00045375 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045375
Unique NameTCONS_00045375
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length575

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045375 ID=TCONS_00045375|Name=TCONS_00045375|organism=Clytia hemisphaerica|type=transcript|length=575bp
caaccccccccccctcccgtttatttggcacctaagagtactttTCTTCT
TCTTGCTGACAGATCGTTGAAGAAGACGGAGAAGAAGACAGCAATGGAAA
GAAACGAAAATTTTCACATATCAACAAGGGTCATTTGCAGAGCAGTATCT
CAAACTTGGCTCAGACGGAATCTGTTGACAAAAGTGAAGATAAAGAAGAC
GAAGATTTTTCGATCGTGGTTTGTCCTTGTCTGCCACCTGTCAGTGCTGA
TATCCCTGCTAAACCAAACCCTACACTTTTCGGATTTTTGCGATGCGTCT
TAAGTTGGATTCTCTTCTTGGTATCTTTCCCATTCGTTATCATGTTCACG
TGGACAATCCCGAATTGTTCGACACCACAGACCAAGAAATATTACCTTCT
CTCTTTCTTCATGTCCATCGCATGGATCGCTGGATTAAGTTTTGCTATGG
TAACGTTGGTGGGACGAGCTGGTTGTATTTTGGAGATTGATAAATTCACA
ATGGGACTTGTGGTGGTTGCCATTGGCACTAGTATTCCGGTGAGCTTTCT
CTTGGTGTTGAACAGGAGCTAGTAC
Run BLAST on NCBI

transcript from alignment at sc0007641:4..808-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045375 ID=TCONS_00045375|Name=TCONS_00045375|organism=Clytia hemisphaerica|type=transcript|length=805bp|location=Sequence derived from alignment at sc0007641:4..808- (Clytia hemisphaerica)
CAACCCCCCCCCCCTCCCGTTTATTTGGCACCTAAGAGTACTTTTCTTCT
TCTTGCTGACAGATCGTTGAAGAAGACGGAGAAGAAGACAGCAATGGAAA
GAAACGAAAATTTTCACATATCAACAAGGGTCATTTGCAGAGCAGTATCT
CAAACTTGGTAAACAATTCATATTTTTACAAAAATTCGATTTGCTATCAT
TATTGTTTCACCTCAGTTGGAAAAAGCTTTATCTTAAAAGAAGCGATTAA
CCACGGCGTGCTATATTTGTATCTAAGAAATTCCGCTTGAAGACTCCATT
ATTCATAGTATCGTTTTAATCAAAGACGGGAAACCAAACTCTTGTCCCTG
TCATATCTATTGATAATATTTGACTTTTTAACTGACAGGCTCAGACGGAA
TCTGTTGACAAAAGTGAAGATAAAGAAGACGAAGATTTTTCGATCGTGGT
TTGTCCTTGTCTGCCACCTGTCAGTGCTGATATCCCTGCTAAACCAAACC
CTACACTTTTCGGATTTTTGCGATGCGTCTTAAGTTGGATTCTCTTCTTG
GTATCTTTCCCATTCGTTATCATGTTCACGTGGACAATCCCGAATTGTTC
GACACCACAGACCAAGAAATATTACCTTCTCTCTTTCTTCATGTCCATCG
CATGGATCGCTGGATTAAGTTTTGCTATGGTAACGTTGGTGGGACGAGCT
GGTTGTATTTTGGAGATTGATAAATTCACAATGGGACTTGTGGTGGTTGC
CATTGGCACTAGTATTCCGGTGAGCTTTCTCTTGGTGTTGAACAGGAGCT
AGTAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028955XLOC_028955Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045375-exon-sc0007641-1575043694:651..808TCONS_00045375-exon-sc0007641-1575043694:651..808Clytia hemisphaericaexon
TCONS_00045375-exon-sc0007641-1575043694:4..420TCONS_00045375-exon-sc0007641-1575043694:4..420Clytia hemisphaericaexon
TCONS_00045375-exon-sc0007641-1510915933:651..808TCONS_00045375-exon-sc0007641-1510915933:651..808Clytia hemisphaericaexon
TCONS_00045375-exon-sc0007641-1510915933:4..420TCONS_00045375-exon-sc0007641-1510915933:4..420Clytia hemisphaericaexon
TCONS_00045375-exon-sc0007641-1491911889:651..808TCONS_00045375-exon-sc0007641-1491911889:651..808Clytia hemisphaericaexon
TCONS_00045375-exon-sc0007641-1491911889:4..420TCONS_00045375-exon-sc0007641-1491911889:4..420Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0007641supercontigsc0007641:4..808 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.39763	6.71132	5.59742	3.11392	120.655	91.7279	55.7067	61.369	168.76	145.597	81.7081	127.823	9.21886	12.3858	4.73363	5.02084	11.6428	10.8148	4.22475	6.36178	16.9635	16.3198	9.33595	9.90236	631.205	328.249	2.39248	1.13481	2.68972	3.06925
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045375 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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