TCONS_00045373 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045373
Unique NameTCONS_00045373
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length669

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045373 ID=TCONS_00045373|Name=TCONS_00045373|organism=Clytia hemisphaerica|type=transcript|length=669bp
ACGCATATGAATTATTGTATGAAAGAtatatttacaaataaaaaaacaaa
tgaatcTTTAATATTTTACATATTGTATAAAGTCATGAAAACAAACATTG
TATGAGAGTTGTAAACAATGGCAATAGGAGGACAACAAAATGAGAAGGAA
TGTACATTCTTCCTTCACCGTTGACGACGGTCACCacttcaaatgttttt
ttccctCTTGATACCTGTTTGCGCAAGGTTTGTTTTCTCTTAGCCTCTGC
ATCTGCTTTGGCTTTAGCCTGATCTTTTTGTTTACGCTTATCATCTGTTG
CAAGTTTAGCTTGGTTGGCAGCATTAATTGTTGAAAAGTAATTCTTATTC
TGGTTGCCTTGCGGAATAGTTTGGTTAAGTTTCTCCATTGCTTTCCGAAT
TCGAAACTCCTCTTCGGCTTTTAGTTTAGCTTCTTGGATGGTTAATTGAC
ATTCGAGACCATCCCATTCCGGATTACACTGACACGTTCCTTTATTGGTA
CACCAACCTCTCGTGGAAGGGCATTTTGAGCATAAGGTATTGAAAACTCC
GTTGCTATTTACACATCTTCTGTTGAGACAATGCTTTCCTTCCCCACATG
GTGTATAATCTAACACCATCgctaaaaataagaaagaacaaaaaattatc
tttttgttGAATAAGTAGC
Run BLAST on NCBI

protein sequence of TCONS_00045373-protein

>TCONS_00045373-protein ID=TCONS_00045373-protein|Name=TCONS_00045373-protein|organism=Clytia hemisphaerica|type=polypeptide|length=194bp
YLFNKKIIFCSFLFLAMVLDYTPCGEGKHCLNRRCVNSNGVFNTLCSKCP
STRGWCTNKGTCQCNPEWDGLECQLTIQEAKLKAEEEFRIRKAMEKLNQT
IPQGNQNKNYFSTINAANQAKLATDDKRKQKDQAKAKADAEAKRKQTLRK
QVSRGKKTFEVVTVVNGEGRMYIPSHFVVLLLPLFTTLIQCLFS
Run BLAST on NCBI

transcript from alignment at sc0007633:17..685

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045373 ID=TCONS_00045373|Name=TCONS_00045373|organism=Clytia hemisphaerica|type=transcript|length=669bp|location=Sequence derived from alignment at sc0007633:17..685 (Clytia hemisphaerica)
GCTACTTATTCaacaaaaagataattttttgttctttcttatttttagcG
ATGGTGTTAGATTATACACCATGTGGGGAAGGAAAGCATTGTCTCAACAG
AAGATGTGTAAATAGCAACGGAGTTTTCAATACCTTATGCTCAAAATGCC
CTTCCACGAGAGGTTGGTGTACCAATAAAGGAACGTGTCAGTGTAATCCG
GAATGGGATGGTCTCGAATGTCAATTAACCATCCAAGAAGCTAAACTAAA
AGCCGAAGAGGAGTTTCGAATTCGGAAAGCAATGGAGAAACTTAACCAAA
CTATTCCGCAAGGCAACCAGAATAAGAATTACTTTTCAACAATTAATGCT
GCCAACCAAGCTAAACTTGCAACAGATGATAAGCGTAAACAAAAAGATCA
GGCTAAAGCCAAAGCAGATGCAGAGGCTAAGAGAAAACAAACCTTGCGCA
AACAGGTATCAAGagggaaaaaaacatttgaagtGGTGACCGTCGTCAAC
GGTGAAGGAAGAATGTACATTCCTTCTCATTTTGTTGTCCTCCTATTGCC
ATTGTTTACAACTCTCATACAATGTTTGTTTTCATGACTTTATACAATAT
GTAAAATATTAAAgattcatttgtttttttatttgtaaatataTCTTTCA
TACAATAATTCATATGCGT

Coding sequence (CDS) from alignment at sc0007633:17..685

>TCONS_00045373 ID=TCONS_00045373|Name=TCONS_00045373|organism=Clytia hemisphaerica|type=CDS|length=585bp|location=Sequence derived from alignment at sc0007633:17..685 (Clytia hemisphaerica)
TACTTATTCaacaaaaagataattttttgttctttcttatttttagcGAT
GGTGTTAGATTATACACCATGTGGGGAAGGAAAGCATTGTCTCAACAGAA
GATGTGTAAATAGCAACGGAGTTTTCAATACCTTATGCTCAAAATGCCCT
TCCACGAGAGGTTGGTGTACCAATAAAGGAACGTGTCAGTGTAATCCGGA
ATGGGATGGTCTCGAATGTCAATTAACCATCCAAGAAGCTAAACTAAAAG
CCGAAGAGGAGTTTCGAATTCGGAAAGCAATGGAGAAACTTAACCAAACT
ATTCCGCAAGGCAACCAGAATAAGAATTACTTTTCAACAATTAATGCTGC
CAACCAAGCTAAACTTGCAACAGATGATAAGCGTAAACAAAAAGATCAGG
CTAAAGCCAAAGCAGATGCAGAGGCTAAGAGAAAACAAACCTTGCGCAAA
CAGGTATCAAGagggaaaaaaacatttgaagtGGTGACCGTCGTCAACGG
TGAAGGAAGAATGTACATTCCTTCTCATTTTGTTGTCCTCCTATTGCCAT
TGTTTACAACTCTCATACAATGTTTGTTTTCATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028953XLOC_028953Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045373-proteinTCONS_00045373-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045373-exon-sc0007633-1491911889:17..685TCONS_00045373-exon-sc0007633-1491911889:17..685Clytia hemisphaericaexon
TCONS_00045373-exon-sc0007633-1510915933:17..685TCONS_00045373-exon-sc0007633-1510915933:17..685Clytia hemisphaericaexon
TCONS_00045373-exon-sc0007633-1575043694:17..685TCONS_00045373-exon-sc0007633-1575043694:17..685Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0007633supercontigsc0007633:17..685 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.154251	0.0752095	0	0	1.04008	1.47939	0.495785	0.0928296	0.129984	0.0805033	0	0.0513652	0.307763	0.426153	0.0437944	0	0.578978	0.237374	1.72171	0	1.19311	0.872935	0.265292	1.44713	1.07648	0.665124	0	0	0	0.0872162
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045373 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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