TCONS_00045369 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045369
Unique NameTCONS_00045369
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length235

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045369 ID=TCONS_00045369|Name=TCONS_00045369|organism=Clytia hemisphaerica|type=transcript|length=235bp
GGGTGATGAGGAAAATGTGGTCGATGTTACGGTACCTTCAGCTGACTTTT
ATGTACCGTTAGATAACAATAAAGATGTCACGTCAGACTCACTCACATTA
GCAAGATCAAATTCAAAGCAAGAAACACCTTTTATTGTTCTGAGTCAggA
TGAGTTTACAGAACACATCGCTTCAATCATTTCATGTCGATTTTCTGATA
ACAATAATATCGTGGCAAGTCTAGATGTATCTGGC
Run BLAST on NCBI

transcript from alignment at sc0007623:2..779+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045369 ID=TCONS_00045369|Name=TCONS_00045369|organism=Clytia hemisphaerica|type=transcript|length=778bp|location=Sequence derived from alignment at sc0007623:2..779+ (Clytia hemisphaerica)
GGGTGATGAGGAAAATGTGGTCGATGTTACGGTACCTTCAGCTGACTTTT
ATGTACCGTTAGATAACAATAAAGATGTCACGTCAGACTCACTCACATTA
GCAAGATCAAATTCAAAGCAAGAAACACCTTTTATTGTTCTGAGTCAggt
acatttttttggttgaaCACAATTTGGAATTAACTTGATAAAATCTTTAC
GTTGTAAGCCGACTGAACtccttttgataatttttttgatttcgtcCTAC
AATCACTGCcatgatattttgcacaaaagGGAAACTCcatcaaaactttt
aaaactgcgattgatttttataaagtgctttaaagtacggttggAAAGAG
TTTTAACTTAGGATCTCAgaatctaaaagctcaaaaatgttccaatatgg
CTGAGAATTAGCTTGGAAGTAGTGAAATTGCAATTCTTGCCCGAGCtttg
aattctgaaaaatgttaaattacccaaattgccaatatattttgGCGCTG
ATTGTAGTTTTGGCTATCCAAAGATTTACTATATACAGTGTTGAAAGTAG
GGCGGTTTCACTTCTCGAAATTCAGCAAAATTCTAAAAGTATGGGCAAAC
TTTTTATACCGAGTCAATTTtccacaaaaatgaaaaatttaactgtgaaa
aattttcattatatttatttcatttttttattttttcttaggATGAGTTT
ACAGAACACATCGCTTCAATCATTTCATGTCGATTTTCTGATAACAATAA
TATCGTGGCAAGTCTAGATGTATCTGGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028949XLOC_028949Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045369-exon-sc0007623-1491911889:2..149TCONS_00045369-exon-sc0007623-1491911889:2..149Clytia hemisphaericaexon
TCONS_00045369-exon-sc0007623-1510915933:2..149TCONS_00045369-exon-sc0007623-1510915933:2..149Clytia hemisphaericaexon
TCONS_00045369-exon-sc0007623-1575043694:2..149TCONS_00045369-exon-sc0007623-1575043694:2..149Clytia hemisphaericaexon
TCONS_00045369-exon-sc0007623-1491911889:693..779TCONS_00045369-exon-sc0007623-1491911889:693..779Clytia hemisphaericaexon
TCONS_00045369-exon-sc0007623-1510915933:693..779TCONS_00045369-exon-sc0007623-1510915933:693..779Clytia hemisphaericaexon
TCONS_00045369-exon-sc0007623-1575043694:693..779TCONS_00045369-exon-sc0007623-1575043694:693..779Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0007623supercontigsc0007623:2..779 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.2608	2.77146	3.82629	1.14558	9.76736	5.33719	8.02763	0	1.4679	4.7196	3.95437	8.83791	3.61861	1.97016	0	9.60376	0.602768	0	14.3411	3.27402	5.03089	4.79606	16.4105	16.9058	4.9811	10.9114	14.9594	7.69301	12.4434	5.0648
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045369 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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