TCONS_00045366 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045366
Unique NameTCONS_00045366
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length344

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045366 ID=TCONS_00045366|Name=TCONS_00045366|organism=Clytia hemisphaerica|type=transcript|length=344bp
CTTCAGAAGTCAATCACTAAAAACGATGCAGACTTTTGTGAATTTTGTTG
GCTATCTTCGCTTTAAAACGCTATCTTGGTCAATAAAAAGATACCTGTGA
TAGTGTAACATGAAAGGAACGGAATCAAACTAAATTTAAATAAGAAAGCG
gtttaaaaatattattaaacaAAGAAACCTATATACAATGACTTATGAAT
GGGTAACAACTCGAACAAGTCGATTAAAGGGACGCCCAACACACACCCTT
TTTGAACTCAAACCAAAACTTAGAAAACTCTATATATACGTGGAATTCAT
CGACCGAATCTTTATTCAGCTGAACAAACTTAgccaaaaatctc
Run BLAST on NCBI

transcript from alignment at sc0007617:9..352

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045366 ID=TCONS_00045366|Name=TCONS_00045366|organism=Clytia hemisphaerica|type=transcript|length=344bp|location=Sequence derived from alignment at sc0007617:9..352 (Clytia hemisphaerica)
gagatttttggcTAAGTTTGTTCAGCTGAATAAAGATTCGGTCGATGAAT
TCCACGTATATATAGAGTTTTCTAAGTTTTGGTTTGAGTTCAAAAAGGGT
GTGTGTTGGGCGTCCCTTTAATCGACTTGTTCGAGTTGTTACCCATTCAT
AAGTCATTGTATATAGGTTTCTTtgtttaataatatttttaaacCGCTTT
CTTATTTAAATTTAGTTTGATTCCGTTCCTTTCATGTTACACTATCACAG
GTATCTTTTTATTGACCAAGATAGCGTTTTAAAGCGAAGATAGCCAACAA
AATTCACAAAAGTCTGCATCGTTTTTAGTGATTGACTTCTGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028946XLOC_028946Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045366-exon-sc0007617-1491911889:9..352TCONS_00045366-exon-sc0007617-1491911889:9..352Clytia hemisphaericaexon
TCONS_00045366-exon-sc0007617-1510915933:9..352TCONS_00045366-exon-sc0007617-1510915933:9..352Clytia hemisphaericaexon
TCONS_00045366-exon-sc0007617-1575043694:9..352TCONS_00045366-exon-sc0007617-1575043694:9..352Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0007617supercontigsc0007617:9..352 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.57678	1.28134	0.595105	0.582217	3.89836	3.36059	1.0136	1.89784	0.221454	0	0.532497	0.175021	0.699112	1.08905	0.149225	0.640565	0.789123	0.202206	0	0	2.54087	2.60263	0	0.821825	0.564307	0.755446	2.16208	3.46115	0.291684	0.59436
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045366 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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