TCONS_00045362 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045362
Unique NameTCONS_00045362
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length238

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045362 ID=TCONS_00045362|Name=TCONS_00045362|organism=Clytia hemisphaerica|type=transcript|length=238bp
GCTCTTACAATCTTTCCAGGCATTTTAGTGGTGACGCATTATCTTCTAAA
AGATTATTTGTGCATCGGAACAAATGTTTAGCCCATACTCCAGCTTCTGA
TATACTAGATGTTACAAAGTTAACAAAGGTTAAGTCAACCATGTTTGGGC
CATAAACAACTGTGACCGTCCTTTCTTGAATGGCGCTAGCCTCGTTATCA
AAAGCACAAAAACCTTTGATGGCCTCTTTGGTAGCCTA
Run BLAST on NCBI

transcript from alignment at sc0007610:290..583-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045362 ID=TCONS_00045362|Name=TCONS_00045362|organism=Clytia hemisphaerica|type=transcript|length=294bp|location=Sequence derived from alignment at sc0007610:290..583- (Clytia hemisphaerica)
GCTCTTACAATCTTTCCAGGCATTTTAGTGGTGACGCATTATCTTCTAAA
AGATTATTTGTGCATCGGAACAAATGTTTAGCCCATACTCCAGCTTCTGA
TATACTAGATGTTACAAAGTTAACAAAGGTTAAGTCAACCATATTTGGGC
CATAAACAACNTAGATGTTACAAAGTTAACAAAGGTTAAGTCAACCATGT
TTGGGCCATAAACAACTGTGACCGTCCTTTCTTGAATGGCGCTAGCCTCG
TTATCAAAAGCACAAAAACCTTTGATGGCCTCTTTGGTAGCCTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028942XLOC_028942Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045362-exon-sc0007610-1575043694:456..583TCONS_00045362-exon-sc0007610-1575043694:456..583Clytia hemisphaericaexon
TCONS_00045362-exon-sc0007610-1575043694:290..399TCONS_00045362-exon-sc0007610-1575043694:290..399Clytia hemisphaericaexon
TCONS_00045362-exon-sc0007610-1510915933:456..583TCONS_00045362-exon-sc0007610-1510915933:456..583Clytia hemisphaericaexon
TCONS_00045362-exon-sc0007610-1510915933:290..399TCONS_00045362-exon-sc0007610-1510915933:290..399Clytia hemisphaericaexon
TCONS_00045362-exon-sc0007610-1491911889:456..583TCONS_00045362-exon-sc0007610-1491911889:456..583Clytia hemisphaericaexon
TCONS_00045362-exon-sc0007610-1491911889:290..399TCONS_00045362-exon-sc0007610-1491911889:290..399Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0007610supercontigsc0007610:290..583 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.53743	0.455111	1.13459	4.11576	160.102	123.463	62.487	62.2887	43.7061	66.2159	61.2714	41.2616	52.9874	74.2208	28.0064	20.4354	36.627	33.0384	76.5946	59.6841	6.17138	0	2.50772	9.24847	35.4256	31.6867	17.2602	17.6305	2.38692	4.85866
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045362 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top