TCONS_00045357 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045357
Unique NameTCONS_00045357
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length452

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045357 ID=TCONS_00045357|Name=TCONS_00045357|organism=Clytia hemisphaerica|type=transcript|length=452bp
caccgagtgggattcgaaccaccaccaaagaaagaccttcagaatcggaa
gccagcgctctatccgttgagccatcgcctTTCTGGTAGCTTTTATCGTT
TTTTGATCCGAATTTCGTAGCATAAGATCATCTTTCAGTCTATACAGTTC
CTGAAGCTTTTCATCATTATGCCACGGTTGGTAGATTTTTGGATTTCTGA
TTACTGGTATGTTGTTTGATGCAGCCTCATTAATAGATTTCAAGAGTTTA
TCATTTAATGATGTGTTATCGTTTTCTAGTTCAATCGTATTAAGGTTTTC
GGTAGTTGTATTTTTGAATCTTGTAAGTGTTTCGGCATTAGTCAGAGATG
AGTAGTCGAGACGTTTTGGTTGTACTGTCTTGTTTCTTTTGATGTACCGT
GCTAGTTTTGTACAAGGTGTTTTAAACGTTGCAATAACCAGTCGATGGTC
AC
Run BLAST on NCBI

protein sequence of TCONS_00045357-protein

>TCONS_00045357-protein ID=TCONS_00045357-protein|Name=TCONS_00045357-protein|organism=Clytia hemisphaerica|type=polypeptide|length=150bp
DHRLVIATFKTPCTKLARYIKRNKTVQPKRLDYSSLTNAETLTRFKNTTT
ENLNTIELENDNTSLNDKLLKSINEAASNNIPVIRNPKIYQPWHNDEKLQ
ELYRLKDDLMLRNSDQKTIKATRKAMAQRIERWLPILKVFLWWWFESHSV
Run BLAST on NCBI

transcript from alignment at sc0007596:1..452

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045357 ID=TCONS_00045357|Name=TCONS_00045357|organism=Clytia hemisphaerica|type=transcript|length=452bp|location=Sequence derived from alignment at sc0007596:1..452 (Clytia hemisphaerica)
GTGACCATCGACTGGTTATTGCAACGTTTAAAACACCTTGTACAAAACTA
GCACGGTACATCAAAAGAAACAAGACAGTACAACCAAAACGTCTCGACTA
CTCATCTCTGACTAATGCCGAAACACTTACAAGATTCAAAAATACAACTA
CCGAAAACCTTAATACGATTGAACTAGAAAACGATAACACATCATTAAAT
GATAAACTCTTGAAATCTATTAATGAGGCTGCATCAAACAACATACCAGT
AATCAGAAATCCAAAAATCTACCAACCGTGGCATAATGATGAAAAGCTTC
AGGAACTGTATAGACTGAAAGATGATCTTATGCTACGAAATTCGGATCAA
AAAACGATAAAAGCTACCAGAAaggcgatggctcaacggatagagcgctg
gcttccgattctgaaggtctttctttggtggtggttcgaatcccactcgg
tg

Coding sequence (CDS) from alignment at sc0007596:1..452

>TCONS_00045357 ID=TCONS_00045357|Name=TCONS_00045357|organism=Clytia hemisphaerica|type=CDS|length=450bp|location=Sequence derived from alignment at sc0007596:1..452 (Clytia hemisphaerica)
GACCATCGACTGGTTATTGCAACGTTTAAAACACCTTGTACAAAACTAGC
ACGGTACATCAAAAGAAACAAGACAGTACAACCAAAACGTCTCGACTACT
CATCTCTGACTAATGCCGAAACACTTACAAGATTCAAAAATACAACTACC
GAAAACCTTAATACGATTGAACTAGAAAACGATAACACATCATTAAATGA
TAAACTCTTGAAATCTATTAATGAGGCTGCATCAAACAACATACCAGTAA
TCAGAAATCCAAAAATCTACCAACCGTGGCATAATGATGAAAAGCTTCAG
GAACTGTATAGACTGAAAGATGATCTTATGCTACGAAATTCGGATCAAAA
AACGATAAAAGCTACCAGAAaggcgatggctcaacggatagagcgctggc
ttccgattctgaaggtctttctttggtggtggttcgaatcccactcggtg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028937XLOC_028937Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045357-exon-sc0007596-1491911889:1..452TCONS_00045357-exon-sc0007596-1491911889:1..452Clytia hemisphaericaexon
TCONS_00045357-exon-sc0007596-1510915933:1..452TCONS_00045357-exon-sc0007596-1510915933:1..452Clytia hemisphaericaexon
TCONS_00045357-exon-sc0007596-1575043694:1..452TCONS_00045357-exon-sc0007596-1575043694:1..452Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045357-proteinTCONS_00045357-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0007596supercontigsc0007596:1..452 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.671971	0.463477	1.91125	0.51894	0.197745	0	0.19135	1.09772	2.33891	1.45758	0.3007	0.961941	1.57418	1.84997	1.65776	0.805446	1.24033	1.54176	0.514542	1.41061	2.07882	1.5246	0.404951	0.424466	0	1.35113	2.9406	0.262604	0.554659	0.333647
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045357 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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