|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00045344 ID=TCONS_00045344|Name=TCONS_00045344|organism=Clytia hemisphaerica|type=transcript|length=805bp
CTTGGCCTTTATTGTGAGACTTAAAATACACCGTCAACAGTTTTATAAAA
TTTAGAGGTAATTTTTGTCTAAAATCTTATGCTTTACCTAAGGAGactaa
aaataatcataatATGGATACTTTGAAAGATGTTATCAAGCAATACTTTG
ATGATGGATTTACATACTTAGAAATTGTTGAGATGCTTAGAATCCGAAAT
GGAATGACAACAACGCTTCCaaaattgaaatacttttttAGAAAGAATGG
ATGGAAGAAAAGAGCTTTAGCAGCAGTTAGAAATGCAGAGGAAACAGTTC
GGCAAGCTGTTAGGGATCAGCTCAATGGAAGTTCTCAAGGGTTAGGATAC
CGCCGAATTCATAGAATTTTAACCAATAATGGCATAGTGTGTCGTCGTGA
GGATGTTAGAAAATTTATCTTAGAATTTGATAGGGAGGGTGTTGATTTGA
GAAGAAAGCGCCGACTACATAGACGGAAGTATGTTACTCGCGGGCCAAAC
TATGTTTGGCATGTGGACGGTCATGATAAGCTGAAACCTTTCGGTTTCAG
CATTCATGGTTGTATTGATGGTTACTCTCGTAAAATAATTTGGCTTGAAG
TAGGCCGAACAAATAAAGTTCCTGAAGTCATTGGGAAGTATTACTTGGAT
GCTGTTTCAAGTTATGGCTGTCCTCGTTATCTTAAAGTTGATGATGGAAC
TGAACATGCTTTGATAGAACCATTCCATATCTCTATAAGAAATCTTGATA
CTGACGAAGAAACAGCTCTTAACTCATTTAGCATAATCACTTCACCCCAA
AACCA Run BLAST on NCBI protein sequence of TCONS_00045344-protein >TCONS_00045344-protein ID=TCONS_00045344-protein|Name=TCONS_00045344-protein|organism=Clytia hemisphaerica|type=polypeptide|length=230bp
MDTLKDVIKQYFDDGFTYLEIVEMLRIRNGMTTTLPKLKYFFRKNGWKKR
ALAAVRNAEETVRQAVRDQLNGSSQGLGYRRIHRILTNNGIVCRREDVRK
FILEFDREGVDLRRKRRLHRRKYVTRGPNYVWHVDGHDKLKPFGFSIHGC
IDGYSRKIIWLEVGRTNKVPEVIGKYYLDAVSSYGCPRYLKVDDGTEHAL
IEPFHISIRNLDTDEETALNSFSIITSPQN Run BLAST on NCBI transcript from alignment at sc0007575:1..805 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00045344 ID=TCONS_00045344|Name=TCONS_00045344|organism=Clytia hemisphaerica|type=transcript|length=805bp|location=Sequence derived from alignment at sc0007575:1..805 (Clytia hemisphaerica)
TGGTTTTGGGGTGAAGTGATTATGCTAAATGAGTTAAGAGCTGTTTCTTC
GTCAGTATCAAGATTTCTTATAGAGATATGGAATGGTTCTATCAAAGCAT
GTTCAGTTCCATCATCAACTTTAAGATAACGAGGACAGCCATAACTTGAA
ACAGCATCCAAGTAATACTTCCCAATGACTTCAGGAACTTTATTTGTTCG
GCCTACTTCAAGCCAAATTATTTTACGAGAGTAACCATCAATACAACCAT
GAATGCTGAAACCGAAAGGTTTCAGCTTATCATGACCGTCCACATGCCAA
ACATAGTTTGGCCCGCGAGTAACATACTTCCGTCTATGTAGTCGGCGCTT
TCTTCTCAAATCAACACCCTCCCTATCAAATTCTAAGATAAATTTTCTAA
CATCCTCACGACGACACACTATGCCATTATTGGTTAAAATTCTATGAATT
CGGCGGTATCCTAACCCTTGAGAACTTCCATTGAGCTGATCCCTAACAGC
TTGCCGAACTGTTTCCTCTGCATTTCTAACTGCTGCTAAAGCTCTTTTCT
TCCATCCATTCTTTCTaaaaaagtatttcaattttGGAAGCGTTGTTGTC
ATTCCATTTCGGATTCTAAGCATCTCAACAATTTCTAAGTATGTAAATCC
ATCATCAAAGTATTGCTTGATAACATCTTTCAAAGTATCCATattatgat
tatttttagtCTCCTTAGGTAAAGCATAAGATTTTAGACAAAAATTACCT
CTAAATTTTATAAAACTGTTGACGGTGTATTTTAAGTCTCACAATAAAGG
CCAAG Coding sequence (CDS) from alignment at sc0007575:1..805 >TCONS_00045344 ID=TCONS_00045344|Name=TCONS_00045344|organism=Clytia hemisphaerica|type=CDS|length=690bp|location=Sequence derived from alignment at sc0007575:1..805 (Clytia hemisphaerica)
GTTTTGGGGTGAAGTGATTATGCTAAATGAGTTAAGAGCTGTTTCTTCGT
CAGTATCAAGATTTCTTATAGAGATATGGAATGGTTCTATCAAAGCATGT
TCAGTTCCATCATCAACTTTAAGATAACGAGGACAGCCATAACTTGAAAC
AGCATCCAAGTAATACTTCCCAATGACTTCAGGAACTTTATTTGTTCGGC
CTACTTCAAGCCAAATTATTTTACGAGAGTAACCATCAATACAACCATGA
ATGCTGAAACCGAAAGGTTTCAGCTTATCATGACCGTCCACATGCCAAAC
ATAGTTTGGCCCGCGAGTAACATACTTCCGTCTATGTAGTCGGCGCTTTC
TTCTCAAATCAACACCCTCCCTATCAAATTCTAAGATAAATTTTCTAACA
TCCTCACGACGACACACTATGCCATTATTGGTTAAAATTCTATGAATTCG
GCGGTATCCTAACCCTTGAGAACTTCCATTGAGCTGATCCCTAACAGCTT
GCCGAACTGTTTCCTCTGCATTTCTAACTGCTGCTAAAGCTCTTTTCTTC
CATCCATTCTTTCTaaaaaagtatttcaattttGGAAGCGTTGTTGTCAT
TCCATTTCGGATTCTAAGCATCTCAACAATTTCTAAGTATGTAAATCCAT
CATCAAAGTATTGCTTGATAACATCTTTCAAAGTATCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00045344-exon-sc0007575-1491911889:1..805 | TCONS_00045344-exon-sc0007575-1491911889:1..805 | Clytia hemisphaerica | exon |
| TCONS_00045344-exon-sc0007575-1510915933:1..805 | TCONS_00045344-exon-sc0007575-1510915933:1..805 | Clytia hemisphaerica | exon |
| TCONS_00045344-exon-sc0007575-1575043694:1..805 | TCONS_00045344-exon-sc0007575-1575043694:1..805 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0007575 | supercontig | sc0007575:1..805 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR012337 | RNaseH-like_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
|
