TCONS_00045339 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045339
Unique NameTCONS_00045339
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length713

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045339 ID=TCONS_00045339|Name=TCONS_00045339|organism=Clytia hemisphaerica|type=transcript|length=713bp
taaaccctctaaatcgcttcagcagcatgaaaacatgctaattagagcct
ttggaagtagctcactcgcttataaggtcgcgttttaataTTGGAGAGGA
TCTATTAACAAAAACTACACTacattataataaaaataaaacgtaaACAC
AAAAGGGTTTTATATGTACAATTAGAATTTCCTGGGTCGTTACCCGTACT
GTAATTTTCTACTTATatatattgttatattttttcccTTATATAAAATA
TTTGCAATCACAGATTCTGCTCGCAGAATTTCAAACTCTCAAGGTTATCT
AAGATAACCTTTCGCGATCGCGAGCCTCGCACGCACCGTATTGTTGCGCN
CAATCACAGATTCTGCTCGCAGAATTTCAAACTCTCAAGGTTATCTAAGA
TAACCTTTCGCGATCGCGAGCCTCGCACGCACCGTATTGTTGCGCGAAGG
AgcgaaaaacaaagttttgtgcgAATTGCACGTGTAATCTCGTTAACATT
AcgggcggctctaaaggcctaaaaaccggttttctggcaagcGACTTTAT
AATTCCCACCATGAAATCAAGACGAGAAATTGCGATCAGCTACTTTGCTA
CTtcgttacgtaattaaatattcgACCAAAATTATTACGTCATTGTAAAG
ACTGAATAACTTAAATCATTAGACATTGAAATAAGTAAGTAAAGACTGAA
TACTTAATTATTA
Run BLAST on NCBI

transcript from alignment at sc0007549:142..854

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045339 ID=TCONS_00045339|Name=TCONS_00045339|organism=Clytia hemisphaerica|type=transcript|length=713bp|location=Sequence derived from alignment at sc0007549:142..854 (Clytia hemisphaerica)
TAATAATTAAGTATTCAGTCTTTACTTACTTATTTCAATGTCTAATGATT
TAAGTTATTCAGTCTTTACAATGACGTAATAATTTTGGTcgaatatttaa
ttacgtaacgaAGTAGCAAAGTAGCTGATCGCAATTTCTCGTCTTGATTT
CATGGTGGGAATTATAAAGTCgcttgccagaaaaccggtttttaggcctt
tagagccgcccgTAATGTTAACGAGATTACACGTGCAATTcgcacaaaac
tttgtttttcgcTCCTTCGCGCAACAATACGGTGCGTGCGAGGCTCGCGA
TCGCGAAAGGTTATCTTAGATAACCTTGAGAGTTTGAAATTCTGCGAGCA
GAATCTGTGATTGNGCGCAACAATACGGTGCGTGCGAGGCTCGCGATCGC
GAAAGGTTATCTTAGATAACCTTGAGAGTTTGAAATTCTGCGAGCAGAAT
CTGTGATTGCAAATATTTTATATAAgggaaaaaatataacaatatatATA
AGTAGAAAATTACAGTACGGGTAACGACCCAGGAAATTCTAATTGTACAT
ATAAAACCCTTTTGTGTttacgttttatttttattataatgtAGTGTAGT
TTTTGTTAATAGATCCTCTCCAAtattaaaacgcgaccttataagcgagt
gagctacttccaaaggctctaattagcatgttttcatgctgctgaagcga
tttagagggttta
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028920XLOC_028920Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045339-exon-sc0007549-1491911889:142..854TCONS_00045339-exon-sc0007549-1491911889:142..854Clytia hemisphaericaexon
TCONS_00045339-exon-sc0007549-1510915933:142..854TCONS_00045339-exon-sc0007549-1510915933:142..854Clytia hemisphaericaexon
TCONS_00045339-exon-sc0007549-1575043694:142..854TCONS_00045339-exon-sc0007549-1575043694:142..854Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0007549supercontigsc0007549:142..854 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.183716	0.267967	0.243967	0.917956	0.283656	0.651229	0.797434	1.62551	6.87599	2.56825	1.42383	4.90358	4.9333	0.24772	0.203896	0.685557	0.278118	1.00997	0.102601	0.319003	0.337633	0.304386	0.279379	15.3818	16.3089	0.352119	0.720045	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045339 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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