TCONS_00045337 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045337
Unique NameTCONS_00045337
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length269

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045337 ID=TCONS_00045337|Name=TCONS_00045337|organism=Clytia hemisphaerica|type=transcript|length=269bp
GTGATAGAAGCATTGAAGTAAAAGAAAGCAAAGATTGTGATAAATACACG
AAGACTTGCGAGCAATACAAGAAGGAATCTAAAACTTTATCCAAATGTCC
AGTTGCATGCCGTCACAAGGACTGCAGCTATTACGGTTGGGGATCATGGT
CTGCAACCTGTGGTTCAGTTTCTCGTTCTCGAAAACTATACTACACACGT
GACACGATTACTTATGTCAAGGAAAGTACAGACTGTAACAAATACCCTAA
AACATGTAACAACTACGAT
Run BLAST on NCBI

transcript from alignment at sc0007544:214..859-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045337 ID=TCONS_00045337|Name=TCONS_00045337|organism=Clytia hemisphaerica|type=transcript|length=646bp|location=Sequence derived from alignment at sc0007544:214..859- (Clytia hemisphaerica)
GTGATAGAAGCATTGAAGTAAAAGAAAGCAAAGATTGTGATAAATACACG
AAGACTTGCGAGCAATACAAGAAGGAATCTAAAACTTTATCCAAATGTCC
AGGTAATGGATTTTTTGGGTGAAATATTTGTGGTTCTTCATTTTACACTT
GAAAGATGATGTCAAGGGAACTTCCCTTCAAGCGCGTTCTTCAGCTGGTA
AATTTGATATTTAGGGTTGTGAAGCTTCTTTTTTACCAAGCAAACTTAAA
ACTTTAAAGCAATATCCATCTATTGCTCATAGCGTTCATGATTTTAAATA
ATGTCTGAAAGAGCCTGTGTGTNTAAAGCAATATCCATCTATTGCTCATA
GCGTTAATGATTTTAAATAATGTCTGAAAGAGCCTGTGTGTCAGTTAGTT
GCTTCTCGAGAAAACCTTCTCGAAAAAAGTTTACTTTGTTGCCACTTTTC
TAAATTTCAATGTCATACTTTCTTTATAGTTGCATGCCGTCACAAGGACT
GCAGCTATTACGGTTGGGGATCATGGTCTGCAACCTGTGGTTCAGTTTCT
CGTTCTCGAAAACTATACTACACACGTGACACGATTACTTATGTCAAGGA
AAGTACAGACTGTAACAAATACCCTAAAACATGTAACAACTACGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028918XLOC_028918Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045337-exon-sc0007544-1575043694:758..859TCONS_00045337-exon-sc0007544-1575043694:758..859Clytia hemisphaericaexon
TCONS_00045337-exon-sc0007544-1575043694:214..380TCONS_00045337-exon-sc0007544-1575043694:214..380Clytia hemisphaericaexon
TCONS_00045337-exon-sc0007544-1510915933:758..859TCONS_00045337-exon-sc0007544-1510915933:758..859Clytia hemisphaericaexon
TCONS_00045337-exon-sc0007544-1510915933:214..380TCONS_00045337-exon-sc0007544-1510915933:214..380Clytia hemisphaericaexon
TCONS_00045337-exon-sc0007544-1491911889:758..859TCONS_00045337-exon-sc0007544-1491911889:758..859Clytia hemisphaericaexon
TCONS_00045337-exon-sc0007544-1491911889:214..380TCONS_00045337-exon-sc0007544-1491911889:214..380Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0007544supercontigsc0007544:214..859 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.636798	0	0.612605	0	1.38384	0.968858	0.600044	0	1.14857	8.02884	4.36754	0	3.50308	3.02085	1.32698	26.8882	39.647	8.3372	10.5732	4.61391	3.59547	16.0474	22.0338	0	0	0.638057	0.650079
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045337 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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