TCONS_00045333 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045333
Unique NameTCONS_00045333
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length742

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045333 ID=TCONS_00045333|Name=TCONS_00045333|organism=Clytia hemisphaerica|type=transcript|length=742bp
AGCAGACTACTATAGTCAGTCCATCATTACCTTCGTAAAGTCGTTTGACA
AGTACAAATCTGTCACTATTTTCCTGTAGCACTTTGAACTTATTGTTTTC
GATAGTGAAACTTCTTTTACTTTCGTTCTGTTTCATTGAGTAGATGACTT
TGGAAGGACTATAAATAAACGAACATGCTATTGGGCTTTTAAAGGTTGGT
TGCTTACTATGTCCATGTATTTAGCTTTGTTACTCAGTTACTACTAATAT
CACCGGCTATTAATTAACGGCTAGGGCTGCTTTGAGTGATTTTGCTTCAA
TTTTGGAGCATTGCAGTGCACTAAGCACTCGTTGTTTAGTGTTAACTGTT
GTTTAGTGTTCCAAATTGATCCATGTGAAATGTGACTTGGTGTTGTAATA
CCAGTAGTATTGAAAGAGGTATTATAACGAATTCTAGAATCAAAGCAGAC
CGATATAGAGTGTTTATTGggtaaaattcttatttttttctttattatca
tTCAGTTAAAGGTTTCTTGAATAATATATCACACAAGATTCCCTCCTATC
CCAATTCTATATCTTTGGTTTGTGATTTCAGTATTCTATTGGTTGAGATG
TAATAAGATTATTCTTTTCTCTTGTCATGTTCAAAATCCTTTAGGACTTT
CTTTTTGGATTGAGGAATCCTAGGAGACAGTTTAAGTACGATTAAATATT
CACATTTTGGTTGACGCGCTATCAGGTCATGCTTTGGTTCAG
Run BLAST on NCBI

transcript from alignment at sc0007532:100..841

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045333 ID=TCONS_00045333|Name=TCONS_00045333|organism=Clytia hemisphaerica|type=transcript|length=742bp|location=Sequence derived from alignment at sc0007532:100..841 (Clytia hemisphaerica)
CTGAACCAAAGCATGACCTGATAGCGCGTCAACCAAAATGTGAATATTTA
ATCGTACTTAAACTGTCTCCTAGGATTCCTCAATCCAAAAAGAAAGTCCT
AAAGGATTTTGAACATGACAAGAGAAAAGAATAATCTTATTACATCTCAA
CCAATAGAATACTGAAATCACAAACCAAAGATATAGAATTGGGATAGGAG
GGAATCTTGTGTGATATATTATTCAAGAAACCTTTAACTGAatgataata
aagaaaaaaataagaattttaccCAATAAACACTCTATATCGGTCTGCTT
TGATTCTAGAATTCGTTATAATACCTCTTTCAATACTACTGGTATTACAA
CACCAAGTCACATTTCACATGGATCAATTTGGAACACTAAACAACAGTTA
ACACTAAACAACGAGTGCTTAGTGCACTGCAATGCTCCAAAATTGAAGCA
AAATCACTCAAAGCAGCCCTAGCCGTTAATTAATAGCCGGTGATATTAGT
AGTAACTGAGTAACAAAGCTAAATACATGGACATAGTAAGCAACCAACCT
TTAAAAGCCCAATAGCATGTTCGTTTATTTATAGTCCTTCCAAAGTCATC
TACTCAATGAAACAGAACGAAAGTAAAAGAAGTTTCACTATCGAAAACAA
TAAGTTCAAAGTGCTACAGGAAAATAGTGACAGATTTGTACTTGTCAAAC
GACTTTACGAAGGTAATGATGGACTGACTATAGTAGTCTGCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028914XLOC_028914Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045333-exon-sc0007532-1491911889:100..841TCONS_00045333-exon-sc0007532-1491911889:100..841Clytia hemisphaericaexon
TCONS_00045333-exon-sc0007532-1510915933:100..841TCONS_00045333-exon-sc0007532-1510915933:100..841Clytia hemisphaericaexon
TCONS_00045333-exon-sc0007532-1575043694:100..841TCONS_00045333-exon-sc0007532-1575043694:100..841Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0007532supercontigsc0007532:100..841 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.199687	0.129818	1.13048	1.106	0	0	0	0	0	0	0	0.0886603	0.0885371	0.0919466	0	0	0	0	0	0.222127	0.128713	0.0941722	0	0	0	0.0637809	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045333 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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