TCONS_00045303 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045303
Unique NameTCONS_00045303
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length461

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045303 ID=TCONS_00045303|Name=TCONS_00045303|organism=Clytia hemisphaerica|type=transcript|length=461bp
tagatttgaTGAGAGGAAAATCTTCTACTGAGGTTGTTTTTGATGATGAT
TGTCTTCCTGATCCAgtttTTGAAGATCTTGATATGCCTGAAAACTCTGT
CAAAAGAAAGAGGAAGTCATGGAAAGAACGAATGGAGAAAATTGAAAAGT
CATGGTATCAAGAAAAGGAGAAAGTAATGGATGCGATAAAATCATCTCTC
GTTATGACTGAAAAGTGTCAGCAATGTGTGTTAAAGCCTGCTTGTTTGAA
CTGTAAAGAATGTCGAATGGAACTGTGTGAAACATGTGATCAAGAAAACC
ATATAAAAAGACCACTTCATAATCGTATTTGTTTGGTGAATGGTGTGAAT
AAACCTTTATCCCCAATGCAagcactgaatgaaaattttgaaatctgcaC
CGTTGGTAAGTTCATATATTATGTAACACATCCATACTCTCCTCCTGGGT
TTGGGTCCTCC
Run BLAST on NCBI

protein sequence of TCONS_00045303-protein

>TCONS_00045303-protein ID=TCONS_00045303-protein|Name=TCONS_00045303-protein|organism=Clytia hemisphaerica|type=polypeptide|length=153bp
DLMRGKSSTEVVFDDDCLPDPVFEDLDMPENSVKRKRKSWKERMEKIEKS
WYQEKEKVMDAIKSSLVMTEKCQQCVLKPACLNCKECRMELCETCDQENH
IKRPLHNRICLVNGVNKPLSPMQALNENFEICTVGKFIYYVTHPYSPPGF
GSS
Run BLAST on NCBI

transcript from alignment at sc0007460:10..595-

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045303 ID=TCONS_00045303|Name=TCONS_00045303|organism=Clytia hemisphaerica|type=transcript|length=586bp|location=Sequence derived from alignment at sc0007460:10..595- (Clytia hemisphaerica)
TAGATTTGATGAGAGGAAAATCTTCTACTGAGGTTGTTTTTGATGATGAT
TGTCTTCCTGATCCAGGTAAAAATTTAAATTGCTAATCAGTGCTAATCAT
AAGCCTAGTTTTTAGCATTTTAGAAAATAAGAGTATTCTCTTTATAATTC
TCATTAGAATATTAAAATTTAAATCTTATTTTATATTTTAGTTTTTGAAG
ATCTTGATATGCCTGAAAACTCTGTCAAAAGAAAGAGGAAGTCATGGAAA
GAACGAATGGAGAAAATTGAAAAGTCATGGTATCAAGAAAAGGAGAAAGT
AATGGATGCGATAAAATCATCTCTCGTTATGACTGAAAAGTGTCAGCAAT
GTGTGTTAAAGCCTGCTTGTTTGAACTGTAAAGAATGTCGAATGGAACTG
TGTGAAACATGTGATCAAGAAAACCATATAAAAAGACCACTTCATAATCG
TATTTGTTTGGTGAATGGTGTGAATAAACCTTTATCCCCAATGCAAGCAC
TGAATGAAAATTTTGAAATCTGCACCGTTGGTAAGTTCATATATTATGTA
ACACATCCATACTCTCCTCCTGGGTTTGGGTCCTCC

Coding sequence (CDS) from alignment at sc0007460:10..595-

>TCONS_00045303 ID=TCONS_00045303|Name=TCONS_00045303|organism=Clytia hemisphaerica|type=CDS|length=918bp|location=Sequence derived from alignment at sc0007460:10..595- (Clytia hemisphaerica)
TTTTTGAAGATCTTGATATGCCTGAAAACTCTGTCAAAAGAAAGAGGAAG
TCATGGAAAGAACGAATGGAGAAAATTGAAAAGTCATGGTATCAAGAAAA
GGAGAAAGTAATGGATGCGATAAAATCATCTCTCGTTATGACTGAAAAGT
GTCAGCAATGTGTGTTAAAGCCTGCTTGTTTGAACTGTAAAGAATGTCGA
ATGGAACTGTGTGAAACATGTGATCAAGAAAACCATATAAAAAGACCACT
TCATAATCGTATTTGTTTGGTGAATGGTGTGAATAAACCTTTATCCCCAA
TGCAAGCACTGAATGAAAATTTTGAAATCTGCACCGTTGGTAAGTTCATA
TATTATGTAACACATCCATACTCTCCTCCTGGGTTTGGGTCCTCCGATTT
GATGAGAGGAAAATCTTCTACTGAGGTTGTTTTTGATGATGATTGTCTTC
CTGATCCAGTTTTTGAAGATCTTGATATGCCTGAAAACTCTGTCAAAAGA
AAGAGGAAGTCATGGAAAGAACGAATGGAGAAAATTGAAAAGTCATGGTA
TCAAGAAAAGGAGAAAGTAATGGATGCGATAAAATCATCTCTCGTTATGA
CTGAAAAGTGTCAGCAATGTGTGTTAAAGCCTGCTTGTTTGAACTGTAAA
GAATGTCGAATGGAACTGTGTGAAACATGTGATCAAGAAAACCATATAAA
AAGACCACTTCATAATCGTATTTGTTTGGTGAATGGTGTGAATAAACCTT
TATCCCCAATGCAAGCACTGAATGAAAATTTTGAAATCTGCACCGTTGGT
AAGTTCATATATTATGTAACACATCCATACTCTCCTCCTGGGTTTGGGTC
CTCCGATTTGATGAGAGGAAAATCTTCTACTGAGGTTGTTTTTGATGATG
ATTGTCTTCCTGATCCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028884XLOC_028884Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045303-proteinTCONS_00045303-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045303-exon-sc0007460-1575043694:530..595TCONS_00045303-exon-sc0007460-1575043694:530..595Clytia hemisphaericaexon
TCONS_00045303-exon-sc0007460-1575043694:10..404TCONS_00045303-exon-sc0007460-1575043694:10..404Clytia hemisphaericaexon
TCONS_00045303-exon-sc0007460-1510915933:530..595TCONS_00045303-exon-sc0007460-1510915933:530..595Clytia hemisphaericaexon
TCONS_00045303-exon-sc0007460-1510915933:10..404TCONS_00045303-exon-sc0007460-1510915933:10..404Clytia hemisphaericaexon
TCONS_00045303-exon-sc0007460-1491911889:530..595TCONS_00045303-exon-sc0007460-1491911889:530..595Clytia hemisphaericaexon
TCONS_00045303-exon-sc0007460-1491911889:10..404TCONS_00045303-exon-sc0007460-1491911889:10..404Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0007460supercontigsc0007460:10..595 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.563139	1.51016	0.318807	0	8.92323	6.30112	8.86905	11.0143	6.64365	8.67008	5.42008	11.3452	10.2995	11.3768	4.95642	4.46109	3.27628	4.54966	6.2856	6.57743	4.08356	4.382	1.77563	2.49484	7.40656	28.0595	1.93044	2.67828	1.87512	2.06966
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000315Znf_B-box
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005622 intracellular
molecular_function GO:0008270 zinc ion binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045303 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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