|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00045284 ID=TCONS_00045284|Name=TCONS_00045284|organism=Clytia hemisphaerica|type=transcript|length=499bp
GGTGCTGTCGGCTGTGTCCGAGATATTGCTAACCCGGTGTCACTAGCTCG
TAAAGTAATGGAAGAGACACCTCACTGCATGTTGGTTGGCGAAGGGGCAA
TGAAGTTCGCACAAAAACTACAATACCCAATCCTTGAGAACCCACAAGAC
CTCATCACCAACGATTCCGTCCATAAGAGCTTCATGAAAGGATCAGATGC
ATTCGATGCACACATAAAACTCTACATAGACGAGATCGTTCAAGCGAAAG
GAGATGCAGACCTGAAGAAAATGTTCGAAGAAATTATTTCCAAggaaaaa
gtgaacaaaaagaATGGTCACGATACAGTAGGAGCGGTCGCTATTGATAA
AGAAGGAAATCTGGCATGTGCTACCTCCACAGGTGGATTACCAGGAAAGA
TGCTGGGCCGTGTGGGCGATTCTCCCATCTTTGGTGCAGGAGCATACGGT
GATAAGAATGGGTGTTCTTCATCCACTGGTCATGGCGAACCTTTCTTGA Run BLAST on NCBI protein sequence of TCONS_00045284-protein >TCONS_00045284-protein ID=TCONS_00045284-protein|Name=TCONS_00045284-protein|organism=Clytia hemisphaerica|type=polypeptide|length=166bp
GAVGCVRDIANPVSLARKVMEETPHCMLVGEGAMKFAQKLQYPILENPQD
LITNDSVHKSFMKGSDAFDAHIKLYIDEIVQAKGDADLKKMFEEIISKEK
VNKKNGHDTVGAVAIDKEGNLACATSTGGLPGKMLGRVGDSPIFGAGAYG
DKNGCSSSTGHGEPFL Run BLAST on NCBI transcript from alignment at sc0007403:6..948+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00045284 ID=TCONS_00045284|Name=TCONS_00045284|organism=Clytia hemisphaerica|type=transcript|length=943bp|location=Sequence derived from alignment at sc0007403:6..948+ (Clytia hemisphaerica)
GGTGCTGTCGGCTGTGTCCGAGATATTGCTAACCCGGTGTCACTAGCTCG
TAAAGTAATGGAAGAGACACCTCACTGCATGTTGGTTGGCGAAGGGGCAA
TGAAGTTCGCACAAAAACTACAATACCCAATCCTTGAGAACCCACAAGAC
CTCATCACCAACGATTCCGTCCATAAGAGCTTCATGAAAGGATCAGGTTA
GTAGTTTGCAcaacaaaaatggaaaattaatACAGGTATAAGACAATCAA
CTTGTATTACACAGCGAAACAAGTCTTgaccaaaaacattttcaaatatt
gagATAAGGTACATAAGGAGCAGTTTCATTAAAGCCGActgatttgataa
aaaatttgcaaaactttTGCTGCTCCACCTTGACAACTTCTGCCAGTCTG
TCATCATGGACatctttataaatttattttctcaCAATAGATGCATTCGA
TGCACACATAAAACTCTACATAGACGAGATCGTTCAAGCGAAAGGAGATG
CAGACCTGAAGAAAATGTTCGAAGAAATTATTTCCAAggaaaaagtgaac
aaaaagaATGGTCACGATACAGTAGGAGCGGTCGCTATTGATAAAGAAGG
AAATCTGGCATGTGCTACCTCCACAGGTAAGGCTTCTTGAATAAATGAAC
GATCACAAGACAATCGTTTACCGAAACCTAATGCTAAAGTTATGATTCAA
ATATCAGTGCATAACACAGATTAACGATCAAATATTCTGTTGTATTTTGG
TGTCTATTAAAGCACATTGGAGTAGTTAACTATCAATGGGAAAATATTTA
TATATAACCTTTCGCTGATATTACAGGTGGATTACCAGGAAAGATGCTGG
GCCGTGTGGGCGATTCTCCCATCTTTGGTGCAGGAGCATACGGTGATAAG
AATGGGTGTTCTTCATCCACTGGTCATGGCGAACCTTTCTTGA Coding sequence (CDS) from alignment at sc0007403:6..948+ >TCONS_00045284 ID=TCONS_00045284|Name=TCONS_00045284|organism=Clytia hemisphaerica|type=CDS|length=1494bp|location=Sequence derived from alignment at sc0007403:6..948+ (Clytia hemisphaerica)
GGTGCTGTCGGCTGTGTCCGAGATATTGCTAACCCGGTGTCACTAGCTCG
TAAAGTAATGGAAGAGACACCTCACTGCATGTTGGTTGGCGAAGGGGCAA
TGAAGTTCGCACAAAAACTACAATACCCAATCCTTGAGAACCCACAAGAC
CTCATCACCAACGATTCCGTCCATAAGAGCTTCATGAAAGGATCAGATGC
ATTCGATGCACACATAAAACTCTACATAGACGAGATCGTTCAAGCGAAAG
GAGATGCAGACCTGAAGAAAATGTTCGAAGAAATTATTTCCAAggaaaaa
gtgaacaaaaagaATGGTCACGATACAGTAGGAGCGGTCGCTATTGATAA
AGAAGGAAATCTGGCATGTGCTACCTCCACAGGTGGATTACCAGGAAAGA
TGCTGGGCCGTGTGGGCGATTCTCCCATCTTTGGTGCAGGAGCATACGGT
GATAAGAATGGGTGTTCTTCATCCACTGGTCATGGCGAACCTTTCTTGGG
TGCTGTCGGCTGTGTCCGAGATATTGCTAACCCGGTGTCACTAGCTCGTA
AAGTAATGGAAGAGACACCTCACTGCATGTTGGTTGGCGAAGGGGCAATG
AAGTTCGCACAAAAACTACAATACCCAATCCTTGAGAACCCACAAGACCT
CATCACCAACGATTCCGTCCATAAGAGCTTCATGAAAGGATCAGATGCAT
TCGATGCACACATAAAACTCTACATAGACGAGATCGTTCAAGCGAAAGGA
GATGCAGACCTGAAGAAAATGTTCGAAGAAATTATTTCCAAggaaaaagt
gaacaaaaagaATGGTCACGATACAGTAGGAGCGGTCGCTATTGATAAAG
AAGGAAATCTGGCATGTGCTACCTCCACAGGTGGATTACCAGGAAAGATG
CTGGGCCGTGTGGGCGATTCTCCCATCTTTGGTGCAGGAGCATACGGTGA
TAAGAATGGGTGTTCTTCATCCACTGGTCATGGCGAACCTTTCTTGGGTG
CTGTCGGCTGTGTCCGAGATATTGCTAACCCGGTGTCACTAGCTCGTAAA
GTAATGGAAGAGACACCTCACTGCATGTTGGTTGGCGAAGGGGCAATGAA
GTTCGCACAAAAACTACAATACCCAATCCTTGAGAACCCACAAGACCTCA
TCACCAACGATTCCGTCCATAAGAGCTTCATGAAAGGATCAGATGCATTC
GATGCACACATAAAACTCTACATAGACGAGATCGTTCAAGCGAAAGGAGA
TGCAGACCTGAAGAAAATGTTCGAAGAAATTATTTCCAAggaaaaagtga
acaaaaagaATGGTCACGATACAGTAGGAGCGGTCGCTATTGATAAAGAA
GGAAATCTGGCATGTGCTACCTCCACAGGTGGATTACCAGGAAAGATGCT
GGGCCGTGTGGGCGATTCTCCCATCTTTGGTGCAGGAGCATACGGTGATA
AGAATGGGTGTTCTTCATCCACTGGTCATGGCGAACCTTTCTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00045284-exon-sc0007403-1491911889:6..201 | TCONS_00045284-exon-sc0007403-1491911889:6..201 | Clytia hemisphaerica | exon |
| TCONS_00045284-exon-sc0007403-1510915933:6..201 | TCONS_00045284-exon-sc0007403-1510915933:6..201 | Clytia hemisphaerica | exon |
| TCONS_00045284-exon-sc0007403-1575043694:6..201 | TCONS_00045284-exon-sc0007403-1575043694:6..201 | Clytia hemisphaerica | exon |
| TCONS_00045284-exon-sc0007403-1491911889:446..631 | TCONS_00045284-exon-sc0007403-1491911889:446..631 | Clytia hemisphaerica | exon |
| TCONS_00045284-exon-sc0007403-1510915933:446..631 | TCONS_00045284-exon-sc0007403-1510915933:446..631 | Clytia hemisphaerica | exon |
| TCONS_00045284-exon-sc0007403-1575043694:446..631 | TCONS_00045284-exon-sc0007403-1575043694:446..631 | Clytia hemisphaerica | exon |
| TCONS_00045284-exon-sc0007403-1491911889:832..948 | TCONS_00045284-exon-sc0007403-1491911889:832..948 | Clytia hemisphaerica | exon |
| TCONS_00045284-exon-sc0007403-1510915933:832..948 | TCONS_00045284-exon-sc0007403-1510915933:832..948 | Clytia hemisphaerica | exon |
| TCONS_00045284-exon-sc0007403-1575043694:832..948 | TCONS_00045284-exon-sc0007403-1575043694:832..948 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0007403 | supercontig | sc0007403:6..948 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0016787 | hydrolase activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0016787 |
hydrolase activity |
Blast
BLAST of TCONS_00045284 vs. Swiss-Prot (Human)
Match: ASGL1 (Isoaspartyl peptidase/L-asparaginase OS=Homo sapiens GN=ASRGL1 PE=1 SV=2) HSP 1 Score: 106.686 bits (265), Expect = 1.194e-27 Identity = 69/167 (41.32%), Postives = 89/167 (53.29%), Query Frame = 1
Query: 1 GAVGCVRDIANPVSLARKVMEETPHCMLVGEGAMKFAQKLQYPILENPQDLITNDSVHKSFMKGSDAFDAHIKLYIDEIVQAKGDADLKKMFEEIISKEKVNKKNGHDTVGAVAIDKEGNLACATSTGGLPGKMLGRVGDSPIFGAGAYGDKN-GCSSSTGHGEPFL 498
GAV V+ IANP+ LAR VME+TPHC L +GA +FA + P E P + + + K K + H K +K + + TVGAVA+D +GN+A ATSTGG+ KM+GRVGDSP GAG Y D + G S+TGHGE L
Sbjct: 90 GAVSAVQCIANPIKLARLVMEKTPHCFLTDQGAAQFAAAMGVP--EIPGEKLVTERNKKRLEK-----EKHEK-----------------------GAQKTDCQKNLGTVGAVALDCKGNVAYATSTGGIVNKMVGRVGDSPCLGAGGYADNDIGAVSTTGHGESIL 226
The following BLAST results are available for this feature:
|
