TCONS_00045273 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045273
Unique NameTCONS_00045273
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length409

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045273 ID=TCONS_00045273|Name=TCONS_00045273|organism=Clytia hemisphaerica|type=transcript|length=409bp
GGCTCTTTCAAGCTTATCTGCCCCAAATTTTTTCTTGCATGACTTGTGAA
ACTTTGCTCTGTGTCTGATTAAAGCGTCTTCAAGTGATATTTCTCCTTGC
TCCAACTTTTGAATGTCTAGCGAAACTGGCAGTAAATCAATGCTTTTGAA
TTTTATTATGCGTTTAGCAAGTTCCCTGTAAGGTCGTTCTTTGTCTCCAG
TTTTCGCATCTGAGGTTGCTTGAAGATGCTCTGCTTCATCTTTTTGACAT
ATAAAGCAGCGGGTCCAATCAATCTTTTCGTTATCTTGATCGCTCTTAAT
AGTTTTAGGATCCTTTCCTACATCAACCGTCACAACACTTcttctttttg
acatttttggcaattacctatttcattttatttttcaaattatttagtaa
acatctaaa
Run BLAST on NCBI

protein sequence of TCONS_00045273-protein

>TCONS_00045273-protein ID=TCONS_00045273-protein|Name=TCONS_00045273-protein|organism=Clytia hemisphaerica|type=polypeptide|length=118bp
MSKRRSVVTVDVGKDPKTIKSDQDNEKIDWTRCFICQKDEAEHLQATSDA
KTGDKERPYRELAKRIIKFKSIDLLPVSLDIQKLEQGEISLEDALIRHRA
KFHKSCKKKFGADKLERA
Run BLAST on NCBI

transcript from alignment at sc0007370:562..970

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045273 ID=TCONS_00045273|Name=TCONS_00045273|organism=Clytia hemisphaerica|type=transcript|length=409bp|location=Sequence derived from alignment at sc0007370:562..970 (Clytia hemisphaerica)
tttagatgtttactaaataatttgaaaaataaaatgaaataggtaattgc
caaaaatgtcaaaaagaagAAGTGTTGTGACGGTTGATGTAGGAAAGGAT
CCTAAAACTATTAAGAGCGATCAAGATAACGAAAAGATTGATTGGACCCG
CTGCTTTATATGTCAAAAAGATGAAGCAGAGCATCTTCAAGCAACCTCAG
ATGCGAAAACTGGAGACAAAGAACGACCTTACAGGGAACTTGCTAAACGC
ATAATAAAATTCAAAAGCATTGATTTACTGCCAGTTTCGCTAGACATTCA
AAAGTTGGAGCAAGGAGAAATATCACTTGAAGACGCTTTAATCAGACACA
GAGCAAAGTTTCACAAGTCATGCAAGAAAAAATTTGGGGCAGATAAGCTT
GAAAGAGCC

Coding sequence (CDS) from alignment at sc0007370:562..970

>TCONS_00045273 ID=TCONS_00045273|Name=TCONS_00045273|organism=Clytia hemisphaerica|type=CDS|length=354bp|location=Sequence derived from alignment at sc0007370:562..970 (Clytia hemisphaerica)
atgtcaaaaagaagAAGTGTTGTGACGGTTGATGTAGGAAAGGATCCTAA
AACTATTAAGAGCGATCAAGATAACGAAAAGATTGATTGGACCCGCTGCT
TTATATGTCAAAAAGATGAAGCAGAGCATCTTCAAGCAACCTCAGATGCG
AAAACTGGAGACAAAGAACGACCTTACAGGGAACTTGCTAAACGCATAAT
AAAATTCAAAAGCATTGATTTACTGCCAGTTTCGCTAGACATTCAAAAGT
TGGAGCAAGGAGAAATATCACTTGAAGACGCTTTAATCAGACACAGAGCA
AAGTTTCACAAGTCATGCAAGAAAAAATTTGGGGCAGATAAGCTTGAAAG
AGCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028854XLOC_028854Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045273-exon-sc0007370-1491911889:562..970TCONS_00045273-exon-sc0007370-1491911889:562..970Clytia hemisphaericaexon
TCONS_00045273-exon-sc0007370-1510915933:562..970TCONS_00045273-exon-sc0007370-1510915933:562..970Clytia hemisphaericaexon
TCONS_00045273-exon-sc0007370-1575043694:562..970TCONS_00045273-exon-sc0007370-1575043694:562..970Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045273-proteinTCONS_00045273-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0007370supercontigsc0007370:562..970 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.536345	0.86491	1.88554	0	0	0	0.684184	1.19716	0.298964	0.594289	0	0	0.219957	0.575096	0.262616	0.108096	0.0549247	0	0	0.394646	0.250986	0.0743175	0.0360892	0.59944	0.400205	0.232194	0	0.0613126	0.393775	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045273 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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