TCONS_00045271 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045271
Unique NameTCONS_00045271
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length485

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045271 ID=TCONS_00045271|Name=TCONS_00045271|organism=Clytia hemisphaerica|type=transcript|length=485bp
ACAGCTTGTAGCTTGGTGATGGACGTTCTCTTCATTGCGGACCTGTCAGG
AAGCAACAATCAACATTACGATACAATGAAAGATTTTATAATCGAAATTG
GAGAGAATCTAAACATCGGTTGGAACAGAAGTCATTTCTCTTATCTACCA
TACGCCGAATATCCAGTCCCTCGAACCGACAAATTGGATTTCTTCGATAA
CGTTCAAATAAGAAGTTTGACGAATCCAACTAAAGAACAAGTGACGAGTT
ATTTGACCAATGTTGTTCATCCTACAAGCCAAGGAATGGgTAAAACATAT
CTTGCAAAAGCTTTCCATTACGCAAACTTGACCATTTTCAACGAGACGAA
CGGGATGCGCGCGGACGTCAAGAAACTGGTCATCGCTCTGACTGATGGGA
AAGAGAGTGATCACGGAATGCTATTCTTAGATGATCCGACGCCTTCACTT
AACGATTCTGCTAGTGCTTTGAAGTTGAGAGGTAG
Run BLAST on NCBI

protein sequence of TCONS_00045271-protein

>TCONS_00045271-protein ID=TCONS_00045271-protein|Name=TCONS_00045271-protein|organism=Clytia hemisphaerica|type=polypeptide|length=161bp
TACSLVMDVLFIADLSGSNNQHYDTMKDFIIEIGENLNIGWNRSHFSYLP
YAEYPVPRTDKLDFFDNVQIRSLTNPTKEQVTSYLTNVVHPTSQGMGKTY
LAKAFHYANLTIFNETNGMRADVKKLVIALTDGKESDHGMLFLDDPTPSL
NDSASALKLRG
Run BLAST on NCBI

transcript from alignment at sc0007368:24..888+

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045271 ID=TCONS_00045271|Name=TCONS_00045271|organism=Clytia hemisphaerica|type=transcript|length=865bp|location=Sequence derived from alignment at sc0007368:24..888+ (Clytia hemisphaerica)
ACAGCTTGTAGCTTGGTGATGGACGTTCTCTTCATTGCGGACCTGTCAGG
AAGCAACAATCAACATTACGATACAATGAAAGATTTTATAATCGAAATTG
GAGAGAATCTAAACATCGGTTGGAACAGAAGTCATTTCTCTTATCTACCA
TACGCCGAATATCCAGTCCCTCGAACCGACAAATTGGATTTCTTCGATAA
CGTTCAAATAAGAAGTTTGACGAATCCAACTAAAGAACAAGTGACGAGTT
ATTTGACCAATGTTGTTCATCCTACAAGCCAAGGAATGGGTAAGAAAGAA
CGCTACAAATTCAGAATCCTCAAATTTCAATTGCACTCAATAtgttattc
ttgatatgcgaaAGTTATTTTTCTAACGGGTTTTAATTACAAAATGATAA
CGAGTTTAAGATTTACGTTAAGAGTATCAAGCTTTCTTATTTCATGTATT
CACTACAAGTTTCTCTTTTGACCTGTCCCAATTTATGAAACAGAatccaa
aaattgattgataGGGGCCTTTCTAGCCTGGAAGAGTATATATGTACCAG
AGTGTCTCACGTTTATAACAGCGTAGTACgagttttgaaatttccctagc
TCTTTATTAAATCAGGTTAGGATAAGACAAGAACGTTACAAAAATCACTT
CcaatttccattgtttcaggTAAAACATATCTTGCAAAAGCTTTCCATTA
CGCAAACTTGACCATTTTCAACGAGACGAACGGGATGCGCGCGGACGTCA
AGAAACTGGTCATCGCTCTGACTGATGGGAAAGAGAGTGATCACGGAATG
CTATTCTTAGATGATCCGACGCCTTCACTTAACGATTCTGCTAGTGCTTT
GAAGTTGAGAGGTAG

Coding sequence (CDS) from alignment at sc0007368:24..888+

>TCONS_00045271 ID=TCONS_00045271|Name=TCONS_00045271|organism=Clytia hemisphaerica|type=CDS|length=966bp|location=Sequence derived from alignment at sc0007368:24..888+ (Clytia hemisphaerica)
ACAGCTTGTAGCTTGGTGATGGACGTTCTCTTCATTGCGGACCTGTCAGG
AAGCAACAATCAACATTACGATACAATGAAAGATTTTATAATCGAAATTG
GAGAGAATCTAAACATCGGTTGGAACAGAAGTCATTTCTCTTATCTACCA
TACGCCGAATATCCAGTCCCTCGAACCGACAAATTGGATTTCTTCGATAA
CGTTCAAATAAGAAGTTTGACGAATCCAACTAAAGAACAAGTGACGAGTT
ATTTGACCAATGTTGTTCATCCTACAAGCCAAGGAATGGgTAAAACATAT
CTTGCAAAAGCTTTCCATTACGCAAACTTGACCATTTTCAACGAGACGAA
CGGGATGCGCGCGGACGTCAAGAAACTGGTCATCGCTCTGACTGATGGGA
AAGAGAGTGATCACGGAATGCTATTCTTAGATGATCCGACGCCTTCACTT
AACGATTCTGCTAGTGCTTTGAAGTTGAGAGGTACAGCTTGTAGCTTGGT
GATGGACGTTCTCTTCATTGCGGACCTGTCAGGAAGCAACAATCAACATT
ACGATACAATGAAAGATTTTATAATCGAAATTGGAGAGAATCTAAACATC
GGTTGGAACAGAAGTCATTTCTCTTATCTACCATACGCCGAATATCCAGT
CCCTCGAACCGACAAATTGGATTTCTTCGATAACGTTCAAATAAGAAGTT
TGACGAATCCAACTAAAGAACAAGTGACGAGTTATTTGACCAATGTTGTT
CATCCTACAAGCCAAGGAATGGgTAAAACATATCTTGCAAAAGCTTTCCA
TTACGCAAACTTGACCATTTTCAACGAGACGAACGGGATGCGCGCGGACG
TCAAGAAACTGGTCATCGCTCTGACTGATGGGAAAGAGAGTGATCACGGA
ATGCTATTCTTAGATGATCCGACGCCTTCACTTAACGATTCTGCTAGTGC
TTTGAAGTTGAGAGGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028852XLOC_028852Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045271-proteinTCONS_00045271-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045271-exon-sc0007368-1491911889:24..312TCONS_00045271-exon-sc0007368-1491911889:24..312Clytia hemisphaericaexon
TCONS_00045271-exon-sc0007368-1510915933:24..312TCONS_00045271-exon-sc0007368-1510915933:24..312Clytia hemisphaericaexon
TCONS_00045271-exon-sc0007368-1575043694:24..312TCONS_00045271-exon-sc0007368-1575043694:24..312Clytia hemisphaericaexon
TCONS_00045271-exon-sc0007368-1491911889:693..888TCONS_00045271-exon-sc0007368-1491911889:693..888Clytia hemisphaericaexon
TCONS_00045271-exon-sc0007368-1510915933:693..888TCONS_00045271-exon-sc0007368-1510915933:693..888Clytia hemisphaericaexon
TCONS_00045271-exon-sc0007368-1575043694:693..888TCONS_00045271-exon-sc0007368-1575043694:693..888Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0007368supercontigsc0007368:24..888 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.257085	0.752095	0.436627	0	4.33367	5.20528	8.59361	13.4603	0.974883	1.34172	7.94408	2.65387	7.09564	8.96696	3.9415	16.4493	5.98278	5.63763	0.136644	0	5.09557	4.00095	2.65292	3.88582	9.38471	11.9476	0.528772	0	0	0.14536
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002035VWF_A
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045271 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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