TCONS_00045260 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045260
Unique NameTCONS_00045260
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length228

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045260 ID=TCONS_00045260|Name=TCONS_00045260|organism=Clytia hemisphaerica|type=transcript|length=228bp
ttttatttgaaagagtttattttatttataactTAAGAAAAGTTAGTATT
AGTTTATAGAGAAATTTTGGACACGTTGGTGTAAAACTAGTTTGCTGGCT
TGACTTTTTTTCAGCCTTTATTATACGttgatcaatttttttgttatatA
ACTATAATATATTATAGTCCAGATTTATTGTATTCCGAATATttattaaa
caaaataaatagaTAATCAATAATACAA
Run BLAST on NCBI

transcript from alignment at sc0007330:761..988

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045260 ID=TCONS_00045260|Name=TCONS_00045260|organism=Clytia hemisphaerica|type=transcript|length=228bp|location=Sequence derived from alignment at sc0007330:761..988 (Clytia hemisphaerica)
TTGTATTATTGATTAtctatttattttgtttaataaATATTCGGAATACA
ATAAATCTGGACTATAATATATTATAGTTatataacaaaaaaattgatca
aCGTATAATAAAGGCTGAAAAAAAGTCAAGCCAGCAAACTAGTTTTACAC
CAACGTGTCCAAAATTTCTCTATAAACTAATACTAACTTTTCTTAagtta
taaataaaataaactctttcaaataaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028842XLOC_028842Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045260-exon-sc0007330-1491911889:761..988TCONS_00045260-exon-sc0007330-1491911889:761..988Clytia hemisphaericaexon
TCONS_00045260-exon-sc0007330-1510915933:761..988TCONS_00045260-exon-sc0007330-1510915933:761..988Clytia hemisphaericaexon
TCONS_00045260-exon-sc0007330-1575043694:761..988TCONS_00045260-exon-sc0007330-1575043694:761..988Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0007330supercontigsc0007330:761..988 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	1.13829	0	0	0.725276	0	0.619238	1.32907	0	0.839095	0	1.21308	0	0	1.25038	1.13677	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045260 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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