TCONS_00045254 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045254
Unique NameTCONS_00045254
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length423

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045254 ID=TCONS_00045254|Name=TCONS_00045254|organism=Clytia hemisphaerica|type=transcript|length=423bp
AGATAAGATGTTGTTTGAAGAATCAAGTGAATTTTTTACTTTGCTTCAAA
TAAGTGGGTCAATGGAAATtccatttgaaaataatgataaCATTAAAAGT
AATGCTTTTCGACTGCTGGATGAAATTAGAGATCCGTTATGGTCAAGGAT
CATGGAAAATTGTGATACATTTAAGAAAAGAAATTGTGACGCAGAGTTCC
AAGAGATTTTTGGAAGtaatattttcaagaaattatCAGAAGGAGAGAGA
CACGTTTTTGAAGCAAGCTTTGTAATTCAAGGTATTTGTAATAGTTGCGG
TAGTGAAAAAGAACGTAGAGAAACTGGTAACATTGTTAGTATCCTTTCAG
AAATTATGTATCCAGAGATTATGATTGATGCAAGTTCATGGCCGAACTGT
TTATTGAATTCTCTTATTAATCC
Run BLAST on NCBI

protein sequence of TCONS_00045254-protein

>TCONS_00045254-protein ID=TCONS_00045254-protein|Name=TCONS_00045254-protein|organism=Clytia hemisphaerica|type=polypeptide|length=140bp
DKMLFEESSEFFTLLQISGSMEIPFENNDNIKSNAFRLLDEIRDPLWSRI
MENCDTFKKRNCDAEFQEIFGSNIFKKLSEGERHVFEASFVIQGICNSCG
SEKERRETGNIVSILSEIMYPEIMIDASSWPNCLLNSLIN
Run BLAST on NCBI

transcript from alignment at sc0007319:582..1004

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045254 ID=TCONS_00045254|Name=TCONS_00045254|organism=Clytia hemisphaerica|type=transcript|length=423bp|location=Sequence derived from alignment at sc0007319:582..1004 (Clytia hemisphaerica)
GGATTAATAAGAGAATTCAATAAACAGTTCGGCCATGAACTTGCATCAAT
CATAATCTCTGGATACATAATTTCTGAAAGGATACTAACAATGTTACCAG
TTTCTCTACGTTCTTTTTCACTACCGCAACTATTACAAATACCTTGAATT
ACAAAGCTTGCTTCAAAAACGTGTCTCTCTCCTTCTGataatttcttgaa
aatattaCTTCCAAAAATCTCTTGGAACTCTGCGTCACAATTTCTTTTCT
TAAATGTATCACAATTTTCCATGATCCTTGACCATAACGGATCTCTAATT
TCATCCAGCAGTCGAAAAGCATTACTTTTAATGttatcattattttcaaa
tggaATTTCCATTGACCCACTTATTTGAAGCAAAGTAAAAAATTCACTTG
ATTCTTCAAACAACATCTTATCT

Coding sequence (CDS) from alignment at sc0007319:582..1004

>TCONS_00045254 ID=TCONS_00045254|Name=TCONS_00045254|organism=Clytia hemisphaerica|type=CDS|length=420bp|location=Sequence derived from alignment at sc0007319:582..1004 (Clytia hemisphaerica)
ATTAATAAGAGAATTCAATAAACAGTTCGGCCATGAACTTGCATCAATCA
TAATCTCTGGATACATAATTTCTGAAAGGATACTAACAATGTTACCAGTT
TCTCTACGTTCTTTTTCACTACCGCAACTATTACAAATACCTTGAATTAC
AAAGCTTGCTTCAAAAACGTGTCTCTCTCCTTCTGataatttcttgaaaa
tattaCTTCCAAAAATCTCTTGGAACTCTGCGTCACAATTTCTTTTCTTA
AATGTATCACAATTTTCCATGATCCTTGACCATAACGGATCTCTAATTTC
ATCCAGCAGTCGAAAAGCATTACTTTTAATGttatcattattttcaaatg
gaATTTCCATTGACCCACTTATTTGAAGCAAAGTAAAAAATTCACTTGAT
TCTTCAAACAACATCTTATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028836XLOC_028836Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045254-proteinTCONS_00045254-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045254-exon-sc0007319-1491911889:582..1004TCONS_00045254-exon-sc0007319-1491911889:582..1004Clytia hemisphaericaexon
TCONS_00045254-exon-sc0007319-1510915933:582..1004TCONS_00045254-exon-sc0007319-1510915933:582..1004Clytia hemisphaericaexon
TCONS_00045254-exon-sc0007319-1575043694:582..1004TCONS_00045254-exon-sc0007319-1575043694:582..1004Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0007319supercontigsc0007319:582..1004 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.89318	1.54726	0.523052	1.10306	0.223569	0.176667	0	0	0	0	0	0.59233	0.110258	0.373179	0	0	0	0	0	0	0.189744	0.938202	0	0.172814	0	0.476568	0	0	0	0.187474
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045254 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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