TCONS_00045194 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045194
Unique NameTCONS_00045194
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length787

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045194 ID=TCONS_00045194|Name=TCONS_00045194|organism=Clytia hemisphaerica|type=transcript|length=787bp
gccgttttgataattttggagCTATCAAAAATTTGGCTTTTTAAAATTCT
AggttaaaaatctgaaaatctaaaaatttaaagtgtGCGTATAGCTCCAT
TTAAAACAGTTCACCGTTGACCATAAAACAAAGCTTCTATATGAAATGTT
TTCATAATAAACTACATATAGTTAAGGCAGAAATATTTAAATTTCAATGC
TCCGTTAAGAAACCAATAACAGATTTAATTTTGAGATGGACATGCACGAC
CATTTTTGTGATTGACACAACATCCCTTCTGTCGATTAAAGATCTGTCCA
CATGGGCATGGCATACATTTTGGTGAACCCCAGACACATTGGCAAAAATT
CCTTGGGTTTCTGTGGAAGGTGTATCCGCCATTGACTAGTTTTGATCCAT
CACCGCTTGGACAGAATGGACATCCGTCATCAGGGCCTGTAAAATGAATT
AAGATTTAAGATTGAGAAATTGCATTTAACTTGTCAAAGCaattggttat
ttttcaaaaggtttATGTATATGGCTTTCTTATTGACTTCAAAAATTCCA
AGTTTCCTCAgcgaaaaaactgaaaaaataacGATGAAAGTTGATTTGAT
AGACATGGAAAGGAAATCCAGGCATCTTTGGAAAGAATCACGAACAACGA
TGTTTTCCTTGCAAGTTGTTCTTAATCCATAAGAAAATAAAGTTTGAATA
AAAGCTTTTTTGTCCGATTGTGAATCAAATCAGTTTTTCAGTAACTTTTC
ATTTGAATTTCTCAAGTATGTTTGAAATCAATTATGG
Run BLAST on NCBI

transcript from alignment at sc0007171:78..864

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045194 ID=TCONS_00045194|Name=TCONS_00045194|organism=Clytia hemisphaerica|type=transcript|length=787bp|location=Sequence derived from alignment at sc0007171:78..864 (Clytia hemisphaerica)
CCATAATTGATTTCAAACATACTTGAGAAATTCAAATGAAAAGTTACTGA
AAAACTGATTTGATTCACAATCGGACAAAAAAGCTTTTATTCAAACTTTA
TTTTCTTATGGATTAAGAACAACTTGCAAGGAAAACATCGTTGTTCGTGA
TTCTTTCCAAAGATGCCTGGATTTCCTTTCCATGTCTATCAAATCAACTT
TCATCgttattttttcagttttttcgcTGAGGAAACTTGGAATTTTTGAA
GTCAATAAGAAAGCCATATACATaaaccttttgaaaaataaccaattGCT
TTGACAAGTTAAATGCAATTTCTCAATCTTAAATCTTAATTCATTTTACA
GGCCCTGATGACGGATGTCCATTCTGTCCAAGCGGTGATGGATCAAAACT
AGTCAATGGCGGATACACCTTCCACAGAAACCCAAGGAATTTTTGCCAAT
GTGTCTGGGGTTCACCAAAATGTATGCCATGCCCATGTGGACAGATCTTT
AATCGACAGAAGGGATGTTGTGTCAATCACAAAAATGGTCGTGCATGTCC
ATCTCAAAATTAAATCTGTTATTGGTTTCTTAACGGAGCATTGAAATTTA
AATATTTCTGCCTTAACTATATGTAGTTTATTATGAAAACATTTCATATA
GAAGCTTTGTTTTATGGTCAACGGTGAACTGTTTTAAATGGAGCTATACG
CacactttaaatttttagattttcagatttttaaccTAGAATTTTAAAAA
GCCAAATTTTTGATAGctccaaaattatcaaaacggc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028777XLOC_028777Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045194-exon-sc0007171-1491911889:78..864TCONS_00045194-exon-sc0007171-1491911889:78..864Clytia hemisphaericaexon
TCONS_00045194-exon-sc0007171-1510915933:78..864TCONS_00045194-exon-sc0007171-1510915933:78..864Clytia hemisphaericaexon
TCONS_00045194-exon-sc0007171-1575043694:78..864TCONS_00045194-exon-sc0007171-1575043694:78..864Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0007171supercontigsc0007171:78..864 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.165549	0	0	0.295513	0.0517239	0.128137	0	0.858456	12.7773	13.5661	195.703	60.7056	3.9627	1.88913	0	0.204834	0.0593458	0	0.0703773	0.0639832	0.329506	0.352891	0	0.179645	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045194 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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