TCONS_00045189 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045189
Unique NameTCONS_00045189
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length356

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045189 ID=TCONS_00045189|Name=TCONS_00045189|organism=Clytia hemisphaerica|type=transcript|length=356bp
TTTTGCCGCTGCACCAAGCAAAACATTATATACAACCGACGTCACTCATT
CAGCTGGAGTTGACCACAAATTTAACGCAAAACCGAAAGCTTTTGGTGCA
AGTCCCAGTGGTGGGCAAACAGCATCATCAAAGAAATTCGACCCAGCTGA
ATATGCTAAAAGAAAGAAGGAAGAACTGgagaaatacaaagaagagaaaa
acaaacctGTTGTCCCAGATTCggatgttttgaaaatgttacaaaataca
aaaattcaaGATAACGGCCAACAAGGTGGTGGCTCTTTCAACAAATTACA
AGATTCTCTCAACAATGAAGGTATGTTTTTCATTCATGAATGAAATTAGC
TTGGaa
Run BLAST on NCBI

protein sequence of TCONS_00045189-protein

>TCONS_00045189-protein ID=TCONS_00045189-protein|Name=TCONS_00045189-protein|organism=Clytia hemisphaerica|type=polypeptide|length=113bp
FAAAPSKTLYTTDVTHSAGVDHKFNAKPKAFGASPSGGQTASSKKFDPAE
YAKRKKEELEKYKEEKNKPVVPDSDVLKMLQNTKIQDNGQQGGGSFNKLQ
DSLNNEGMFFIHE
Run BLAST on NCBI

transcript from alignment at sc0007158:1..713+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045189 ID=TCONS_00045189|Name=TCONS_00045189|organism=Clytia hemisphaerica|type=transcript|length=713bp|location=Sequence derived from alignment at sc0007158:1..713+ (Clytia hemisphaerica)
TTTTGCCGCTGCACCAAGCAAAACATTATATACAACCGACGTCACTCATT
CAGCTGGAGTTGACCACAAATTTAACGCAAAACCGAAAGCTTTTGGTGCA
AGTCCCAGTGGTGGGCAAACAGCATCATCAAAGAAATTCGACCCAGCTGA
ATATGCTAAAAGAAAGTATGCATTCGTCTTAAAATCTTTATAATCCTACT
ATAtcactgaagattgccatcctgTATGGCATGAAACTTAAAACTCGTTT
TAATCCTGCAATAATCTTAGGTGTTACGATCCTACTtagacatgattaat
taactaTTATTGTGACATTAAtaaaatctggcaaaaattgatataaatga
TAACAAAAATTACAAATGGTTTTTTATCCAATAACAGGGGAGAAAGCCTT
TCATTTCTAGCTCAGTAAAAATGTACAAATAACTTAAAAATAACTTATAT
ATTTGCTGATCCATTCAATGCTGCTTTTATACCATTACGACTGACTTTAT
GCTATATTCTTCATGATCAAAGGAAGGAAGAACTGgagaaatacaaagaa
gagaaaaacaaacctGTTGTCCCAGATTCggatgttttgaaaatgttaca
aaatacaaaaattcaaGATAACGGCCAACAAGGTGGTGGCTCTTTCAACA
AATTACAAGATTCTCTCAACAATGAAGGTATGTTTTTCATTCATGAATGA
AATTAGCTTGGaa

Coding sequence (CDS) from alignment at sc0007158:1..713+

>TCONS_00045189 ID=TCONS_00045189|Name=TCONS_00045189|organism=Clytia hemisphaerica|type=CDS|length=684bp|location=Sequence derived from alignment at sc0007158:1..713+ (Clytia hemisphaerica)
TTTGCCGCTGCACCAAGCAAAACATTATATACAACCGACGTCACTCATTC
AGCTGGAGTTGACCACAAATTTAACGCAAAACCGAAAGCTTTTGGTGCAA
GTCCCAGTGGTGGGCAAACAGCATCATCAAAGAAATTCGACCCAGCTGAA
TATGCTAAAAGAAAGAAGGAAGAACTGgagaaatacaaagaagagaaaaa
caaacctGTTGTCCCAGATTCggatgttttgaaaatgttacaaaatacaa
aaattcaaGATAACGGCCAACAAGGTGGTGGCTCTTTCAACAAATTACAA
GATTCTCTCAACAATGAAGGTATGTTTTTCATTCATGAATGATTTGCCGC
TGCACCAAGCAAAACATTATATACAACCGACGTCACTCATTCAGCTGGAG
TTGACCACAAATTTAACGCAAAACCGAAAGCTTTTGGTGCAAGTCCCAGT
GGTGGGCAAACAGCATCATCAAAGAAATTCGACCCAGCTGAATATGCTAA
AAGAAAGAAGGAAGAACTGgagaaatacaaagaagagaaaaacaaacctG
TTGTCCCAGATTCggatgttttgaaaatgttacaaaatacaaaaattcaa
GATAACGGCCAACAAGGTGGTGGCTCTTTCAACAAATTACAAGATTCTCT
CAACAATGAAGGTATGTTTTTCATTCATGAATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028772XLOC_028772Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045189-proteinTCONS_00045189-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045189-exon-sc0007158-1491911889:1..165TCONS_00045189-exon-sc0007158-1491911889:1..165Clytia hemisphaericaexon
TCONS_00045189-exon-sc0007158-1510915933:1..165TCONS_00045189-exon-sc0007158-1510915933:1..165Clytia hemisphaericaexon
TCONS_00045189-exon-sc0007158-1575043694:1..165TCONS_00045189-exon-sc0007158-1575043694:1..165Clytia hemisphaericaexon
TCONS_00045189-exon-sc0007158-1491911889:523..713TCONS_00045189-exon-sc0007158-1491911889:523..713Clytia hemisphaericaexon
TCONS_00045189-exon-sc0007158-1510915933:523..713TCONS_00045189-exon-sc0007158-1510915933:523..713Clytia hemisphaericaexon
TCONS_00045189-exon-sc0007158-1575043694:523..713TCONS_00045189-exon-sc0007158-1575043694:523..713Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0007158supercontigsc0007158:1..713 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.17211	4.47164	4.91874	4.81222	80.3904	61.9825	140.25	158.896	60.6063	109.583	68.4642	44.3627	193.737	195.363	61.2585	74.5639	88.5955	108.635	194.982	144.435	59.5033	63.5105	24.6282	40.756	50.2696	71.4593	118.143	127.498	102.864	143.011
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045189 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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