TCONS_00045185 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045185
Unique NameTCONS_00045185
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1019

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045185 ID=TCONS_00045185|Name=TCONS_00045185|organism=Clytia hemisphaerica|type=transcript|length=1019bp
ggtagatagctatcgaaagagaagCCTTCAGGTCGCCTCCGACTTAGAAC
TTCTCGCTTTTATCACGGTTGGTTTTAATTTCTAATTCCTATTTTTTTGC
AGCGCAAAGCACAAAACGAGAAGCAAATCttacaaaagaagaaaagttta
cGAATGGCTTCAGCTGCTAAAAAAGTCATTAACATGAACaatatttccaa
aatggtagcCGCTGATGACGACATCATTTACTATGCTAACGAGGCTTTCA
AAGGTACGGATGGGAAACTGACGTTCTCAAAAGGTCAGGAAGTAGAGGTT
GTTGAAAAGTCACCAAACGGTTGGTGGTTCGTAAAGGTCGGGAAGGAAGA
GGGCTGGGTACCGTCTCATATCGTTCAACGACATCGTGGTCATGATATTA
TTGACGATAAGGATTTGGTAGATGGCCAAAAGTACAAGACATTGGGCGGA
TACAAAGCGACCGAGGAGACGGGGATATCCTTCGAACCAGGTCAGATTGT
TGAGGTGCTGGAGAAAGATCCTGCTGGTTGGTGGTTCGTTAAAATCGGAG
ACGAAGAAGGGTGGGCGCCCTCTACATTTCTGGGTGAAATTGCAGAAGAG
GGTGGAACGCCTGCGCCCGccccacaacaacaacaagaagaggcgGGAGA
TTCGTACATCACGCTCAGTGACTATAAAGACCCCGATGAGGGAATGTTGA
GTTTTAAGAAAGGACAAAAAGTGTTCGTGTTAGAGAAAGACGATGGTGGA
TGGTGGCTGGCGAAGTGTGGAACCCAAGAGGGATGGGTGCCTTCTAATTT
CCTCAAGAAAGAAGAATAAATTACCCTTCGTGTTCGTCGGTTTCGTTTAG
AATGACATTTCAGAGGACTCACTTCGGACGCTTTTGTGAGCCTTCAAACC
AACAAAAAGGTCATTTGGTCGCGGTTGAATAGCATTTGATCGCTTTTCCT
GTTAATATGTTTTGAACAAAACAACTAATTTCTTGGATGATATAGATATA
TCTTTTTCTGTTCTGTTTT
Run BLAST on NCBI

protein sequence of TCONS_00045185-protein

>TCONS_00045185-protein ID=TCONS_00045185-protein|Name=TCONS_00045185-protein|organism=Clytia hemisphaerica|type=polypeptide|length=221bp
MASAAKKVINMNNISKMVAADDDIIYYANEAFKGTDGKLTFSKGQEVEVV
EKSPNGWWFVKVGKEEGWVPSHIVQRHRGHDIIDDKDLVDGQKYKTLGGY
KATEETGISFEPGQIVEVLEKDPAGWWFVKIGDEEGWAPSTFLGEIAEEG
GTPAPAPQQQQEEAGDSYITLSDYKDPDEGMLSFKKGQKVFVLEKDDGGW
WLAKCGTQEGWVPSNFLKKEE
Run BLAST on NCBI

transcript from alignment at sc0007154:1..1019

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045185 ID=TCONS_00045185|Name=TCONS_00045185|organism=Clytia hemisphaerica|type=transcript|length=1019bp|location=Sequence derived from alignment at sc0007154:1..1019 (Clytia hemisphaerica)
AAAACAGAACAGAAAAAGATATATCTATATCATCCAAGAAATTAGTTGTT
TTGTTCAAAACATATTAACAGGAAAAGCGATCAAATGCTATTCAACCGCG
ACCAAATGACCTTTTTGTTGGTTTGAAGGCTCACAAAAGCGTCCGAAGTG
AGTCCTCTGAAATGTCATTCTAAACGAAACCGACGAACACGAAGGGTAAT
TTATTCTTCTTTCTTGAGGAAATTAGAAGGCACCCATCCCTCTTGGGTTC
CACACTTCGCCAGCCACCATCCACCATCGTCTTTCTCTAACACGAACACT
TTTTGTCCTTTCTTAAAACTCAACATTCCCTCATCGGGGTCTTTATAGTC
ACTGAGCGTGATGTACGAATCTCCcgcctcttcttgttgttgttgtgggg
CGGGCGCAGGCGTTCCACCCTCTTCTGCAATTTCACCCAGAAATGTAGAG
GGCGCCCACCCTTCTTCGTCTCCGATTTTAACGAACCACCAACCAGCAGG
ATCTTTCTCCAGCACCTCAACAATCTGACCTGGTTCGAAGGATATCCCCG
TCTCCTCGGTCGCTTTGTATCCGCCCAATGTCTTGTACTTTTGGCCATCT
ACCAAATCCTTATCGTCAATAATATCATGACCACGATGTCGTTGAACGAT
ATGAGACGGTACCCAGCCCTCTTCCTTCCCGACCTTTACGAACCACCAAC
CGTTTGGTGACTTTTCAACAACCTCTACTTCCTGACCTTTTGAGAACGTC
AGTTTCCCATCCGTACCTTTGAAAGCCTCGTTAGCATAGTAAATGATGTC
GTCATCAGCGgctaccattttggaaatattGTTCATGTTAATGACTTTTT
TAGCAGCTGAAGCCATTCgtaaacttttcttcttttgtaaGATTTGCTTC
TCGTTTTGTGCTTTGCGCTGCAAAAAAATAGGAATTAGAAATTAAAACCA
ACCGTGATAAAAGCGAGAAGTTCTAAGTCGGAGGCGACCTGAAGGcttct
ctttcgatagctatctacc

Coding sequence (CDS) from alignment at sc0007154:1..1019

>TCONS_00045185 ID=TCONS_00045185|Name=TCONS_00045185|organism=Clytia hemisphaerica|type=CDS|length=666bp|location=Sequence derived from alignment at sc0007154:1..1019 (Clytia hemisphaerica)
TTATTCTTCTTTCTTGAGGAAATTAGAAGGCACCCATCCCTCTTGGGTTC
CACACTTCGCCAGCCACCATCCACCATCGTCTTTCTCTAACACGAACACT
TTTTGTCCTTTCTTAAAACTCAACATTCCCTCATCGGGGTCTTTATAGTC
ACTGAGCGTGATGTACGAATCTCCcgcctcttcttgttgttgttgtgggg
CGGGCGCAGGCGTTCCACCCTCTTCTGCAATTTCACCCAGAAATGTAGAG
GGCGCCCACCCTTCTTCGTCTCCGATTTTAACGAACCACCAACCAGCAGG
ATCTTTCTCCAGCACCTCAACAATCTGACCTGGTTCGAAGGATATCCCCG
TCTCCTCGGTCGCTTTGTATCCGCCCAATGTCTTGTACTTTTGGCCATCT
ACCAAATCCTTATCGTCAATAATATCATGACCACGATGTCGTTGAACGAT
ATGAGACGGTACCCAGCCCTCTTCCTTCCCGACCTTTACGAACCACCAAC
CGTTTGGTGACTTTTCAACAACCTCTACTTCCTGACCTTTTGAGAACGTC
AGTTTCCCATCCGTACCTTTGAAAGCCTCGTTAGCATAGTAAATGATGTC
GTCATCAGCGgctaccattttggaaatattGTTCATGTTAATGACTTTTT
TAGCAGCTGAAGCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028768XLOC_028768Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045185-proteinTCONS_00045185-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045185-exon-sc0007154-1491911889:1..1019TCONS_00045185-exon-sc0007154-1491911889:1..1019Clytia hemisphaericaexon
TCONS_00045185-exon-sc0007154-1510915933:1..1019TCONS_00045185-exon-sc0007154-1510915933:1..1019Clytia hemisphaericaexon
TCONS_00045185-exon-sc0007154-1575043694:1..1019TCONS_00045185-exon-sc0007154-1575043694:1..1019Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0007154supercontigsc0007154:1..1019 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
120.756	111.349	78.5541	72.2922	1.53572	2.00702	4.73016	4.90278	5.57328	12.6182	14.0225	4.7256	36.9948	30.5238	15.6935	13.9323	80.5237	83.5116	45.5823	52.1322	89.0579	93.5711	84.2187	91.4969	97.4374	83.3932	104.141	105.245	34.1758	27.4397
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001452SH3_domain
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
[Close]
BLAST of TCONS_00045185 vs. Swiss-Prot (Human)
Match: SPD2B (SH3 and PX domain-containing protein 2B OS=Homo sapiens GN=SH3PXD2B PE=1 SV=3)

HSP 1 Score: 80.1073 bits (196), Expect = 2.503e-16
Identity = 39/114 (34.21%), Postives = 71/114 (62.28%), Query Frame = 1 
Query:  250 KGTDGKLTFSKGQEVEVVEKSPNGWWFVKVGKEEGWVPSHIVQRHRGHDIIDDK---DLVDGQKYKTLGGYKATEETGISFEPGQIVEVLEKDPAGWWFVKIGDEEGWAPSTFL 582
            K    +++ S GQ V+++EK+ +GWWFV   +E+GWVP+  ++   G D + D+      + +KY  +  Y A ++  ++ E G +VEV++K+  GWW ++   +EGWAP+++L
Sbjct:  165 KQESSEISLSVGQVVDIIEKNESGWWFVSTAEEQGWVPATCLE---GQDGVQDEFSLQPEEEEKYTVIYPYTARDQDEMNLERGAVVEVIQKNLEGWWKIRYQGKEGWAPASYL 275
The following BLAST results are available for this feature:
BLAST of TCONS_00045185 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SPD2B2.503e-1634.21SH3 and PX domain-containing protein 2B OS=Homo sa... [more]
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