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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00045178 ID=TCONS_00045178|Name=TCONS_00045178|organism=Clytia hemisphaerica|type=transcript|length=1137bp
CGAGGTTAATTAGAGGGAAATTGAGCAGTGTTCATTTGAAACAGGCGTTG
AAAATTCTTATTCCTAGGGAATATGTTTCCAGAGAGCGATCACGTAGACA
CATTGCTTCAAAATTGTTACCAGACAGCAAAGAAATAGATGAGAATCATA
ATATCCTGCTTTTTCGTTTCANattgcttcaaaatttttaccagACAGCA
AAGAAATAGATGAGAATCATAATATCCTGCTTTTTCGTTTCGTTATTGCT
AAAGTTGCTAACGACATCGTTGTCTGTAAGGTTGTTTCTTTGAACAACAA
CGGAAAATCCATAATGAGTGCATCCAGTGATGATAAAAATGTCACCTGTC
GTTTGATTCCATTAGAGGAAGTACCACAAAAGAAACATGAGTAtcgtttt
tctgaaaaaataattGTCAGTGATTGGTTGAAAATCTCCAACATCCTTAG
TGAGATCAGTATGGATATAGGTGAAAACGCTAGCATGGTTGTCATGGAAA
AGTCAAGAGAGTTAATCAGGATGGCGAGACAGACTTATACGATTGACGAA
GATCGGAAAATTGCCCAAAAGTTGTCAAAGGGACTGCTTCCATCAGAATT
TAAAGAGGTTGATGATGTATTTGATAAAAAGCTTGATCCAAACAGCCATC
TTTACATCTATCTTGTGAAATTCAAAGGTGAAGAAGGGGAACGGGTTTGG
TTGGACTCTTCATGTTTTGACAGGCCATTTCGTTACAACAAAAGAGATGG
ACTGAAAGTTTCTGATCCGTTGTTTGCTGTTGAAAGGcttgaagattaaa
aaaaagtgaatgatatatcaaattattttcaacgGAATTCAAAAAAGGCC
AGTAAAACCAGCACTTCATCAAAAACCGAGTCTGTCCAAAAAACTGTAAA
GTTAAATTCTCAACAAAAGCTTGCCGAGTTCAGAACAGCATTAGTTGTAG
GAGCCAAACAGGTACAAAGTAAACGAAAATCCATCAACAAATCAGCAAAG
aacattccaaaaaaaactaaaaagatcGAATCTACAAAAAAAACCTTCAT
CAAAAGGCCTGTAGATACTTTTTCTGAATCAACGAAAAAAAGACTCAAAA
TTTCACAATCCAGTGTTGATACATTGCAGCGATTTTC Run BLAST on NCBI protein sequence of TCONS_00045178-protein >TCONS_00045178-protein ID=TCONS_00045178-protein|Name=TCONS_00045178-protein|organism=Clytia hemisphaerica|type=polypeptide|length=161bp
MSASSDDKNVTCRLIPLEEVPQKKHEYRFSEKIIVSDWLKISNILSEISM
DIGENASMVVMEKSRELIRMARQTYTIDEDRKIAQKLSKGLLPSEFKEVD
DVFDKKLDPNSHLYIYLVKFKGEEGERVWLDSSCFDRPFRYNKRDGLKVS
DPLFAVERLED Run BLAST on NCBI transcript from alignment at sc0007140:1..1137 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00045178 ID=TCONS_00045178|Name=TCONS_00045178|organism=Clytia hemisphaerica|type=transcript|length=1137bp|location=Sequence derived from alignment at sc0007140:1..1137 (Clytia hemisphaerica)
GAAAATCGCTGCAATGTATCAACACTGGATTGTGAAATTTTGAGTCTTTT
TTTCGTTGATTCAGAAAAAGTATCTACAGGCCTTTTGATGAAGGTTTTTT
TTGTAGATTCgatctttttagttttttttggaatgttCTTTGCTGATTTG
TTGATGGATTTTCGTTTACTTTGTACCTGTTTGGCTCCTACAACTAATGC
TGTTCTGAACTCGGCAAGCTTTTGTTGAGAATTTAACTTTACAGTTTTTT
GGACAGACTCGGTTTTTGATGAAGTGCTGGTTTTACTGGCCTTTTTTGAA
TTCcgttgaaaataatttgatatatcattcacttttttttaatcttcaag
CCTTTCAACAGCAAACAACGGATCAGAAACTTTCAGTCCATCTCTTTTGT
TGTAACGAAATGGCCTGTCAAAACATGAAGAGTCCAACCAAACCCGTTCC
CCTTCTTCACCTTTGAATTTCACAAGATAGATGTAAAGATGGCTGTTTGG
ATCAAGCTTTTTATCAAATACATCATCAACCTCTTTAAATTCTGATGGAA
GCAGTCCCTTTGACAACTTTTGGGCAATTTTCCGATCTTCGTCAATCGTA
TAAGTCTGTCTCGCCATCCTGATTAACTCTCTTGACTTTTCCATGACAAC
CATGCTAGCGTTTTCACCTATATCCATACTGATCTCACTAAGGATGTTGG
AGATTTTCAACCAATCACTGACaattattttttcagaaaaacgaTACTCA
TGTTTCTTTTGTGGTACTTCCTCTAATGGAATCAAACGACAGGTGACATT
TTTATCATCACTGGATGCACTCATTATGGATTTTCCGTTGTTGTTCAAAG
AAACAACCTTACAGACAACGATGTCGTTAGCAACTTTAGCAATAACGAAA
CGAAAAAGCAGGATATTATGATTCTCATCTATTTCTTTGCTGTctggtaa
aaattttgaagcaatNTGAAACGAAAAAGCAGGATATTATGATTCTCATC
TATTTCTTTGCTGTCTGGTAACAATTTTGAAGCAATGTGTCTACGTGATC
GCTCTCTGGAAACATATTCCCTAGGAATAAGAATTTTCAACGCCTGTTTC
AAATGAACACTGCTCAATTTCCCTCTAATTAACCTCG Coding sequence (CDS) from alignment at sc0007140:1..1137 >TCONS_00045178 ID=TCONS_00045178|Name=TCONS_00045178|organism=Clytia hemisphaerica|type=CDS|length=486bp|location=Sequence derived from alignment at sc0007140:1..1137 (Clytia hemisphaerica)
ttaatcttcaagCCTTTCAACAGCAAACAACGGATCAGAAACTTTCAGTC
CATCTCTTTTGTTGTAACGAAATGGCCTGTCAAAACATGAAGAGTCCAAC
CAAACCCGTTCCCCTTCTTCACCTTTGAATTTCACAAGATAGATGTAAAG
ATGGCTGTTTGGATCAAGCTTTTTATCAAATACATCATCAACCTCTTTAA
ATTCTGATGGAAGCAGTCCCTTTGACAACTTTTGGGCAATTTTCCGATCT
TCGTCAATCGTATAAGTCTGTCTCGCCATCCTGATTAACTCTCTTGACTT
TTCCATGACAACCATGCTAGCGTTTTCACCTATATCCATACTGATCTCAC
TAAGGATGTTGGAGATTTTCAACCAATCACTGACaattattttttcagaa
aaacgaTACTCATGTTTCTTTTGTGGTACTTCCTCTAATGGAATCAAACG
ACAGGTGACATTTTTATCATCACTGGATGCACTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00045178-exon-sc0007140-1491911889:1..1137 | TCONS_00045178-exon-sc0007140-1491911889:1..1137 | Clytia hemisphaerica | exon |
| TCONS_00045178-exon-sc0007140-1510915933:1..1137 | TCONS_00045178-exon-sc0007140-1510915933:1..1137 | Clytia hemisphaerica | exon |
| TCONS_00045178-exon-sc0007140-1575043694:1..1137 | TCONS_00045178-exon-sc0007140-1575043694:1..1137 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0007140 | supercontig | sc0007140:1..1137 . |
Blast
The following BLAST results are available for this feature:
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