TCONS_00045172 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045172
Unique NameTCONS_00045172
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length387

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045172 ID=TCONS_00045172|Name=TCONS_00045172|organism=Clytia hemisphaerica|type=transcript|length=387bp
aattggcagaaattaaaagagggaaagaaatttgatttgtcaCGAAATCT
TGTAATATGCTTTCACACGAACTTTACAGTGAAACAAGTAAAGACTTGGC
GATGAATATGCGTCAATAATGCTAAAGAGGCCATGCAATGATCGTAAAGT
CGAAAAACGTACCGCGAGCTCGGCGGTGGGAGCCGAAACATCAATTCTGT
GCAATGTCAAAGACGTGTGGAGAAAACTTATCACAAAATAAACATCGTCT
CATCAGAAGACCAAGAAATAAATGGTATTAAGAAAAAGAAGTAAAGATGA
TTGTTCGACAACACAACCAAAGAAACATCTTCAATGCTTCAATGAACGAA
GAATCGGAGAACCCTCAGAAAAAGAGGCACGATAATT
Run BLAST on NCBI

transcript from alignment at sc0007131:329..941-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045172 ID=TCONS_00045172|Name=TCONS_00045172|organism=Clytia hemisphaerica|type=transcript|length=613bp|location=Sequence derived from alignment at sc0007131:329..941- (Clytia hemisphaerica)
AATTGGCAGAAATTAAAAGAGGGAAAGAAATTTGATTTGTCACGAAATCT
TGTAATATGCTTTCACACGAACTTTACAGTGAAACAAGTAAAGACTTGGC
GATGAATATGCGTCAATAATGCTAAAGAGGCCATGCAATGATCGTGTAAG
TACTCACTCGTTCAAGTTATTTTTTAAATAACCTGTCTAAAACGCGTAAT
TTCTTTCTTGCTATTATGTTTTTTTGTAATCTTCAAGTCATTTTGGATTT
TAATTAGTTATTTTCAATTTAAAGTTCAATTCAATTTTCAATAAAAATAA
ATGGACAATTAATCTGTTTGATAATCCTGTTTAAAAAGTAGAGTATAATT
TTTATCATTTTCTCTCTACAGAAAGTCGAAAAACGTACCGCGAGCTCGGC
GGTGGGAGCCGAAACATCAATTCTGTGCAATGTCAAAGACGTGTGGAGAA
AACTTATCACAAAATAAACATCGTCTCATCAGAAGACCAAGAAATAAATG
GTATTAAGAAAAAGAAGTAAAGATGATTGTTCGACAACACAACCAAAGAA
ACATCTTCAATGCTTCAATGAACGAAGAATCGGAGAACCCTCAGAAAAAG
AGGCACGATAATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028755XLOC_028755Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045172-exon-sc0007131-1575043694:797..941TCONS_00045172-exon-sc0007131-1575043694:797..941Clytia hemisphaericaexon
TCONS_00045172-exon-sc0007131-1575043694:329..570TCONS_00045172-exon-sc0007131-1575043694:329..570Clytia hemisphaericaexon
TCONS_00045172-exon-sc0007131-1510915933:797..941TCONS_00045172-exon-sc0007131-1510915933:797..941Clytia hemisphaericaexon
TCONS_00045172-exon-sc0007131-1510915933:329..570TCONS_00045172-exon-sc0007131-1510915933:329..570Clytia hemisphaericaexon
TCONS_00045172-exon-sc0007131-1491911889:797..941TCONS_00045172-exon-sc0007131-1491911889:797..941Clytia hemisphaericaexon
TCONS_00045172-exon-sc0007131-1491911889:329..570TCONS_00045172-exon-sc0007131-1491911889:329..570Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0007131supercontigsc0007131:329..941 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.13258	0.901157	0.896716	1.30281	188.457	103.548	29.7773	39.2298	9.60119	23.6124	14.7599	9.28234	1.8066	1.61186	1.01979	1.7046	0.567497	0.754074	0.323989	1.14696	1.36185	1.77433	0	1.06814	0.699801	0.618298	2.13439	0.82684	0.313051	0.077793
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045172 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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