TCONS_00045153 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045153
Unique NameTCONS_00045153
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length273

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045153 ID=TCONS_00045153|Name=TCONS_00045153|organism=Clytia hemisphaerica|type=transcript|length=273bp
CACAATGCTAAACGAAGACTTCACCAACATACACCAAGTATGATATACAG
TCAGAAGCTGGCTGATCGAGCCCAAACATATGCTGAATATTTGAGGGATA
CAGATAAGTTCGATCACGATGACTTTAGAGGATATGGATTTGACAAAAGT
ATTGGAGAAAATCTCTATTGGTCATCATCCAGAATTAGAACACCTGAAAA
CGCTGTTGATTCTTGGTATGTTAACATAAAACAGAATGCTTTTTTGTTTA
ATGGTTTTCTGTGCTTactaaaa
Run BLAST on NCBI

transcript from alignment at sc0007090:904..1176

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045153 ID=TCONS_00045153|Name=TCONS_00045153|organism=Clytia hemisphaerica|type=transcript|length=273bp|location=Sequence derived from alignment at sc0007090:904..1176 (Clytia hemisphaerica)
ttttagtAAGCACAGAAAACCATTAAACAAAAAAGCATTCTGTTTTATGT
TAACATACCAAGAATCAACAGCGTTTTCAGGTGTTCTAATTCTGGATGAT
GACCAATAGAGATTTTCTCCAATACTTTTGTCAAATCCATATCCTCTAAA
GTCATCGTGATCGAACTTATCTGTATCCCTCAAATATTCAGCATATGTTT
GGGCTCGATCAGCCAGCTTCTGACTGTATATCATACTTGGTGTATGTTGG
TGAAGTCTTCGTTTAGCATTGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028736XLOC_028736Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045153-exon-sc0007090-1491911889:904..1176TCONS_00045153-exon-sc0007090-1491911889:904..1176Clytia hemisphaericaexon
TCONS_00045153-exon-sc0007090-1510915933:904..1176TCONS_00045153-exon-sc0007090-1510915933:904..1176Clytia hemisphaericaexon
TCONS_00045153-exon-sc0007090-1575043694:904..1176TCONS_00045153-exon-sc0007090-1575043694:904..1176Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0007090supercontigsc0007090:904..1176 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
9.64387	5.3552	3.93837	1.84876	0	1.73702	1.39709	3.26985	1.73767	3.26486	0.271607	1.56088	5.88026	13.4454	2.01855	0	0	3.2232	29.5193	29.4328	3.14882	1.24175	2.54906	2.94612	0.583357	2.60316	1.06452	0	3.95615	3.15084
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045153 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top