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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00045150 ID=TCONS_00045150|Name=TCONS_00045150|organism=Clytia hemisphaerica|type=transcript|length=1180bp
GGATGTTGATCGGATCGGAAGATACGGTAGTGTCTTGCGTTGAGATGTTG
AGGGTGGTCTTCCATTTGGTCATTGTGGTGGTGAAGAAGTCGATGAGTTT
CTCAGGAAATTTGTGTATCTGGAGAGATCTTGNAAGATACGGTAGTGTCT
TGCGTTGAGATGTTGAGGGTGGTCTTCCATTTGGTCATGGTGGTGGTGAA
GAAGTTGATGAGTTTCTCAGGAAATTTGTGTATCTGGAGAGATCTTTTTA
GCCAGTCATGCGGGACAGAATCAAAAGCTTTTCGATAATCAATCCAGGCT
GTCGATAGGTTGCGTTTTGATTTTCTTGCATTCTCCAGGATCATGTTGTC
GATTAAGAGTTGGTCTACTGTCCCTTGGTTACCTGAGATCCCACCCTTTT
GTTCTTCGGGAATTAGGTCGAATGTAGTTAGGTGGGTTTTCATACGTTTC
GTGATGATGCTGGTCATGATTTTGTATGTGATGGGAAGACATGTGATGGG
GCGGTAGTTGGACGGAATTTCAGTTTGAGGTTTCTTTGGTATGAGTGTTG
TCCTGCCGGAAGTGAACCAGGGAGGGATGGATTGGGGATCATCCATCAAA
CGGTTGTATATCTGGACCTTGTGATCGTGGATTGACTCGAATTTGTTCCA
CCAATAGTTCTGTAGACAGTCAATGCCGGGGCTTTTCCAGTTCGCAAAGT
TCTTCATTGCCTCTGCCATTTCTTCTTTTGTTATTGGTTGGAATTCATAC
GGTTGTATGTCGATTGTCGCTTCGTAATCGGCAATCCACGGGGCGTTGTT
GTTGAAATTCGACTCCGTACCAAGAATTGGTCTCCAGAAGTCTTCGATCT
CTTGTTTAGAAGGTGCTTTGGTGATCGGTATTGCGCATCCTCTAAGTTTT
TTGTAGAATTTGTCGGGGCTGTTGACAAATTCTCTGTTTTGATTAAACTG
GTTTGATCGCTCTTTGTATCGTTTCAGACGGTTGTTTTTTGCAAGGAGTT
TTTGTTTGAGACGTTCACAAGTTAATTTACGTTCTCGATCGTTCGTAATG
GTGAATTTTCGTTTAATTCGTTCATTGTTTCGTCGCATTTTAGGTGACGG
ATTGGCAATGTTCATTTGATCGATTTGGCTGATTTCCTTGCGAAGTTCAA
GAATCGTTGCGTTGATTCGTTTGATCCAAT Run BLAST on NCBI protein sequence of TCONS_00045150-protein >TCONS_00045150-protein ID=TCONS_00045150-protein|Name=TCONS_00045150-protein|organism=Clytia hemisphaerica|type=polypeptide|length=358bp
WIKRINATILELRKEISQIDQMNIANPSPKMRRNNERIKRKFTITNDRER
KLTCERLKQKLLAKNNRLKRYKERSNQFNQNREFVNSPDKFYKKLRGCAI
PITKAPSKQEIEDFWRPILGTESNFNNNAPWIADYEATIDIQPYEFQPIT
KEEMAEAMKNFANWKSPGIDCLQNYWWNKFESIHDHKVQIYNRLMDDPQS
IPPWFTSGRTTLIPKKPQTEIPSNYRPITCLPITYKIMTSIITKRMKTHL
TTFDLIPEEQKGGISGNQGTVDQLLIDNMILENARKSKRNLSTAWIDYRK
AFDSVPHDWLKRSLQIHKFPEKLINFFTTTMTKWKTTLNISTQDTTVSXK
ISPDTQIS Run BLAST on NCBI transcript from alignment at sc0007082:1..1180 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00045150 ID=TCONS_00045150|Name=TCONS_00045150|organism=Clytia hemisphaerica|type=transcript|length=1180bp|location=Sequence derived from alignment at sc0007082:1..1180 (Clytia hemisphaerica)
ATTGGATCAAACGAATCAACGCAACGATTCTTGAACTTCGCAAGGAAATC
AGCCAAATCGATCAAATGAACATTGCCAATCCGTCACCTAAAATGCGACG
AAACAATGAACGAATTAAACGAAAATTCACCATTACGAACGATCGAGAAC
GTAAATTAACTTGTGAACGTCTCAAACAAAAACTCCTTGCAAAAAACAAC
CGTCTGAAACGATACAAAGAGCGATCAAACCAGTTTAATCAAAACAGAGA
ATTTGTCAACAGCCCCGACAAATTCTACAAAAAACTTAGAGGATGCGCAA
TACCGATCACCAAAGCACCTTCTAAACAAGAGATCGAAGACTTCTGGAGA
CCAATTCTTGGTACGGAGTCGAATTTCAACAACAACGCCCCGTGGATTGC
CGATTACGAAGCGACAATCGACATACAACCGTATGAATTCCAACCAATAA
CAAAAGAAGAAATGGCAGAGGCAATGAAGAACTTTGCGAACTGGAAAAGC
CCCGGCATTGACTGTCTACAGAACTATTGGTGGAACAAATTCGAGTCAAT
CCACGATCACAAGGTCCAGATATACAACCGTTTGATGGATGATCCCCAAT
CCATCCCTCCCTGGTTCACTTCCGGCAGGACAACACTCATACCAAAGAAA
CCTCAAACTGAAATTCCGTCCAACTACCGCCCCATCACATGTCTTCCCAT
CACATACAAAATCATGACCAGCATCATCACGAAACGTATGAAAACCCACC
TAACTACATTCGACCTAATTCCCGAAGAACAAAAGGGTGGGATCTCAGGT
AACCAAGGGACAGTAGACCAACTCTTAATCGACAACATGATCCTGGAGAA
TGCAAGAAAATCAAAACGCAACCTATCGACAGCCTGGATTGATTATCGAA
AAGCTTTTGATTCTGTCCCGCATGACTGGCTAAAAAGATCTCTCCAGATA
CACAAATTTCCTGAGAAACTCATCAACTTCTTCACCACCACCATGACCAA
ATGGAAGACCACCCTCAACATCTCAACGCAAGACACTACCGTATCTTNCA
AGATCTCTCCAGATACACAAATTTCCTGAGAAACTCATCGACTTCTTCAC
CACCACAATGACCAAATGGAAGACCACCCTCAACATCTCAACGCAAGACA
CTACCGTATCTTCCGATCCGATCAACATCC Coding sequence (CDS) from alignment at sc0007082:1..1180 >TCONS_00045150 ID=TCONS_00045150|Name=TCONS_00045150|organism=Clytia hemisphaerica|type=CDS|length=1077bp|location=Sequence derived from alignment at sc0007082:1..1180 (Clytia hemisphaerica)
TGGATCAAACGAATCAACGCAACGATTCTTGAACTTCGCAAGGAAATCAG
CCAAATCGATCAAATGAACATTGCCAATCCGTCACCTAAAATGCGACGAA
ACAATGAACGAATTAAACGAAAATTCACCATTACGAACGATCGAGAACGT
AAATTAACTTGTGAACGTCTCAAACAAAAACTCCTTGCAAAAAACAACCG
TCTGAAACGATACAAAGAGCGATCAAACCAGTTTAATCAAAACAGAGAAT
TTGTCAACAGCCCCGACAAATTCTACAAAAAACTTAGAGGATGCGCAATA
CCGATCACCAAAGCACCTTCTAAACAAGAGATCGAAGACTTCTGGAGACC
AATTCTTGGTACGGAGTCGAATTTCAACAACAACGCCCCGTGGATTGCCG
ATTACGAAGCGACAATCGACATACAACCGTATGAATTCCAACCAATAACA
AAAGAAGAAATGGCAGAGGCAATGAAGAACTTTGCGAACTGGAAAAGCCC
CGGCATTGACTGTCTACAGAACTATTGGTGGAACAAATTCGAGTCAATCC
ACGATCACAAGGTCCAGATATACAACCGTTTGATGGATGATCCCCAATCC
ATCCCTCCCTGGTTCACTTCCGGCAGGACAACACTCATACCAAAGAAACC
TCAAACTGAAATTCCGTCCAACTACCGCCCCATCACATGTCTTCCCATCA
CATACAAAATCATGACCAGCATCATCACGAAACGTATGAAAACCCACCTA
ACTACATTCGACCTAATTCCCGAAGAACAAAAGGGTGGGATCTCAGGTAA
CCAAGGGACAGTAGACCAACTCTTAATCGACAACATGATCCTGGAGAATG
CAAGAAAATCAAAACGCAACCTATCGACAGCCTGGATTGATTATCGAAAA
GCTTTTGATTCTGTCCCGCATGACTGGCTAAAAAGATCTCTCCAGATACA
CAAATTTCCTGAGAAACTCATCAACTTCTTCACCACCACCATGACCAAAT
GGAAGACCACCCTCAACATCTCAACGCAAGACACTACCGTATCTTNCAAG
ATCTCTCCAGATACACAAATTTCCTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00045150-exon-sc0007082-1491911889:1..1180 | TCONS_00045150-exon-sc0007082-1491911889:1..1180 | Clytia hemisphaerica | exon |
| TCONS_00045150-exon-sc0007082-1510915933:1..1180 | TCONS_00045150-exon-sc0007082-1510915933:1..1180 | Clytia hemisphaerica | exon |
| TCONS_00045150-exon-sc0007082-1575043694:1..1180 | TCONS_00045150-exon-sc0007082-1575043694:1..1180 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0007082 | supercontig | sc0007082:1..1180 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR000477 | RT_dom |
Blast
The following BLAST results are available for this feature:
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