TCONS_00045145 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045145
Unique NameTCONS_00045145
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length512

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045145 ID=TCONS_00045145|Name=TCONS_00045145|organism=Clytia hemisphaerica|type=transcript|length=512bp
CACCCTGTTagattagaaaaaaacaaatctcCTAAACAATTATGGCACAA
CGCAAGTATGTTGTactcaaacaaagaaaatactGCCATGATGAATCTTT
TTCGCAGAGATCCCAGTGAATATGAACCTATTTTTGAACGATTTAGAAAC
ATCTACACCTTACCAGAACCAGATTCAATTAAGATTGTATTGCCAAGATT
TTCTCTGCCTTTGTCTGATGAACAATTGGGAAGATTGAGCGCATCTATTA
ACGTTTTACNCTCTGCCTTTGTCTGATGAACAATTGGGAAGATTGAGCGC
ATCTATTAACGTTTTACGAGAGAGTAATTATGATGGAATTGACATTTATG
TTGAAGTTATGAAATTTGTGCACGAGAATGTAACAATGTAAATATTAAAA
TTGTTCTGGATGTCTAGTTTTAAAAAAGTATGATTGGAAATAAAGATTGT
ACTGTTTCTGAATTAATGTCTATACTATGAAAATACTAGGAATTGCATTT
AAAATTTCTGAT
Run BLAST on NCBI

transcript from alignment at sc0007068:683..1194

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045145 ID=TCONS_00045145|Name=TCONS_00045145|organism=Clytia hemisphaerica|type=transcript|length=512bp|location=Sequence derived from alignment at sc0007068:683..1194 (Clytia hemisphaerica)
ATCAGAAATTTTAAATGCAATTCCTAGTATTTTCATAGTATAGACATTAA
TTCAGAAACAGTACAATCTTTATTTCCAATCATACTTTTTTAAAACTAGA
CATCCAGAACAATTTTAATATTTACATTGTTACATTCTCGTGCACAAATT
TCATAACTTCAACATAAATGTCAATTCCATCATAATTACTCTCTCGTAAA
ACGTTAATAGATGCGCTCAATCTTCCCAATTGTTCATCAGACAAAGGCAG
AGNGTAAAACGTTAATAGATGCGCTCAATCTTCCCAATTGTTCATCAGAC
AAAGGCAGAGAAAATCTTGGCAATACAATCTTAATTGAATCTGGTTCTGG
TAAGGTGTAGATGTTTCTAAATCGTTCAAAAATAGGTTCATATTCACTGG
GATCTCTGCGAAAAAGATTCATCATGGCagtattttctttgtttgagtAC
AACATACTTGCGTTGTGCCATAATTGTTTAGgagatttgtttttttctaa
tctAACAGGGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028728XLOC_028728Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045145-exon-sc0007068-1491911889:683..1194TCONS_00045145-exon-sc0007068-1491911889:683..1194Clytia hemisphaericaexon
TCONS_00045145-exon-sc0007068-1510915933:683..1194TCONS_00045145-exon-sc0007068-1510915933:683..1194Clytia hemisphaericaexon
TCONS_00045145-exon-sc0007068-1575043694:683..1194TCONS_00045145-exon-sc0007068-1575043694:683..1194Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0007068supercontigsc0007068:683..1194 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.258742	0.522206	0.922601	0.32519	5.17805	3.32337	3.78107	1.66861	1.16247	1.58849	0.483683	0.375826	1.6601	2.08964	0.38575	0.682554	0.568224	0.957963	1.58446	1.80982	0.645981	0	1.70087	1.17513	1.01	1.22011	2.51373	1.33658	4.57581	5.3759
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045145 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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