TCONS_00045144 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045144
Unique NameTCONS_00045144
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length346

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045144 ID=TCONS_00045144|Name=TCONS_00045144|organism=Clytia hemisphaerica|type=transcript|length=346bp
AATCAAGACAGACCTGAGAAACATCATACGTGAAGAATTAAATAAAGAAA
CAAGACCAAGAAATACAAGGTACTCATTCAATGACACCTTCGAAAGAAAT
TTAGCTACAGTAGATGACTTTAAGGACAAATTCATTTCAATGTTGGAAGG
GCACGTTATTTTCCTAGAGGAGGAAATTCGACACAAGAACACTATCATTG
AGTCTCTTATTCAAACAAATCGTTGCACTTTTTTACAAGGAAAAGGCCAA
AATCAGAACTCTGTGTCAAACTCTAACAAAGAGATCACACGTAAAAACAC
TTTTCTACCTACAAATCAATCTAAAAGCAATAATCTTGAACAAGCT
Run BLAST on NCBI

protein sequence of TCONS_00045144-protein

>TCONS_00045144-protein ID=TCONS_00045144-protein|Name=TCONS_00045144-protein|organism=Clytia hemisphaerica|type=polypeptide|length=115bp
IKTDLRNIIREELNKETRPRNTRYSFNDTFERNLATVDDFKDKFISMLEG
HVIFLEEEIRHKNTIIESLIQTNRCTFLQGKGQNQNSVSNSNKEITRKNT
FLPTNQSKSNNLEQA
Run BLAST on NCBI

transcript from alignment at sc0007065:32..377

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045144 ID=TCONS_00045144|Name=TCONS_00045144|organism=Clytia hemisphaerica|type=transcript|length=346bp|location=Sequence derived from alignment at sc0007065:32..377 (Clytia hemisphaerica)
AGCTTGTTCAAGATTATTGCTTTTAGATTGATTTGTAGGTAGAAAAGTGT
TTTTACGTGTGATCTCTTTGTTAGAGTTTGACACAGAGTTCTGATTTTGG
CCTTTTCCTTGTAAAAAAGTGCAACGATTTGTTTGAATAAGAGACTCAAT
GATAGTGTTCTTGTGTCGAATTTCCTCCTCTAGGAAAATAACGTGCCCTT
CCAACATTGAAATGAATTTGTCCTTAAAGTCATCTACTGTAGCTAAATTT
CTTTCGAAGGTGTCATTGAATGAGTACCTTGTATTTCTTGGTCTTGTTTC
TTTATTTAATTCTTCACGTATGATGTTTCTCAGGTCTGTCTTGATT

Coding sequence (CDS) from alignment at sc0007065:32..377

>TCONS_00045144 ID=TCONS_00045144|Name=TCONS_00045144|organism=Clytia hemisphaerica|type=CDS|length=345bp|location=Sequence derived from alignment at sc0007065:32..377 (Clytia hemisphaerica)
AGCTTGTTCAAGATTATTGCTTTTAGATTGATTTGTAGGTAGAAAAGTGT
TTTTACGTGTGATCTCTTTGTTAGAGTTTGACACAGAGTTCTGATTTTGG
CCTTTTCCTTGTAAAAAAGTGCAACGATTTGTTTGAATAAGAGACTCAAT
GATAGTGTTCTTGTGTCGAATTTCCTCCTCTAGGAAAATAACGTGCCCTT
CCAACATTGAAATGAATTTGTCCTTAAAGTCATCTACTGTAGCTAAATTT
CTTTCGAAGGTGTCATTGAATGAGTACCTTGTATTTCTTGGTCTTGTTTC
TTTATTTAATTCTTCACGTATGATGTTTCTCAGGTCTGTCTTGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028727XLOC_028727Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045144-exon-sc0007065-1491911889:32..377TCONS_00045144-exon-sc0007065-1491911889:32..377Clytia hemisphaericaexon
TCONS_00045144-exon-sc0007065-1510915933:32..377TCONS_00045144-exon-sc0007065-1510915933:32..377Clytia hemisphaericaexon
TCONS_00045144-exon-sc0007065-1575043694:32..377TCONS_00045144-exon-sc0007065-1575043694:32..377Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045144-proteinTCONS_00045144-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0007065supercontigsc0007065:32..377 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.121734	0	0	0	0	0	0	0	0	0	0	0.147047	0	0.388802	0.24009	0	0	1.0598	0.437082	0	0.307217	0.278035	0	0	0.378958	0.350349	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045144 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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