TCONS_00045138 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045138
Unique NameTCONS_00045138
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length386

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045138 ID=TCONS_00045138|Name=TCONS_00045138|organism=Clytia hemisphaerica|type=transcript|length=386bp
TTATCATATAGATTCTTACTCTCCAGCTGCAAGCTCCCTGATGGATATAC
AAAAAATGCAAGTATCCCAATGGAAATGATCAAAGGGAAAGAAAGTTACA
GCCAATGTAAGATTTACCAAGACTTTAACTCCACCAGTGGATCGACTGAA
GGTTGTCCAAACGGATGGAACTTCATATTGAATGGTAAAGAATCAACAAT
TGTAAATGAGTGGTCACTTGTTTGCGACCAAAAATATTTGGTTTCCCTTG
CCACAACCATTTATTTCACCGGCGTGATGATCGGGGGTGCAGTTTTCGGA
CAGCTTGGTGATAAATTCGGACGGAAACCAATTACATTGATATGTTTGTA
TTCACATATTGCATTGGCTGTTGGTGTTTATTTCTC
Run BLAST on NCBI

protein sequence of TCONS_00045138-protein

>TCONS_00045138-protein ID=TCONS_00045138-protein|Name=TCONS_00045138-protein|organism=Clytia hemisphaerica|type=polypeptide|length=128bp
LSYRFLLSSCKLPDGYTKNASIPMEMIKGKESYSQCKIYQDFNSTSGSTE
GCPNGWNFILNGKESTIVNEWSLVCDQKYLVSLATTIYFTGVMIGGAVFG
QLGDKFGRKPITLICLYSHIALAVGVYF
Run BLAST on NCBI

transcript from alignment at sc0007042:431..1209+

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045138 ID=TCONS_00045138|Name=TCONS_00045138|organism=Clytia hemisphaerica|type=transcript|length=779bp|location=Sequence derived from alignment at sc0007042:431..1209+ (Clytia hemisphaerica)
TTATCATATAGATTCTTACTCTCCAGCTGCAAGCTCCCTGATGGATATAC
AAAAAATGCAAGTATCCCAATGGAAATGATCAAAGGGAAAGAAAGTTACA
GCCAATGTAAGATTTACCAAGACTTTAACTCCACCAGTGGATCGACTGAA
GGTTGTCCAAACGGATGGAACTTCATATTGAATGGTAAAGAATCAACAAT
TGTAAATGAGGTATGAACATTTGATCTTTAGGTCCTGGATACAGTTTCTC
AATccaaatcaaaatctttgataCTGGTCATCGATGCAGGTCatcacttt
ttttaataaacagCAGGACAGCATTGTATTAAAAACTGATCAACGTCGAT
TACAATTTAGGGTACcaccttttaagaaaatgctCCAATCAAAGAGGGTG
GACTTTAGCTCGACAAGACTTTTTGGCATTTTAGTTTGCTTCTTTCAATG
tattaaaatttagaaattcctATCTAAATCTTTCTTTTCCCCGTCAAATT
TTGCGCTGACGTCGTCGTTGCCGTCGTTTTCACCTATGTCGTCGTACCAG
AAACTTGCTCTTGTGTATTGACGTAAACAAGTTTTTTACACATTTTCTTT
CAGTGGTCACTTGTTTGCGACCAAAAATATTTGGTTTCCCTTGCCACAAC
CATTTATTTCACCGGCGTGATGATCGGGGGTGCAGTTTTCGGACAGCTTG
GTGATAAATTCGGACGGAAACCAATTACATTGATATGTTTGTATTCACAT
ATTGCATTGGCTGTTGGTGTTTATTTCTC

Coding sequence (CDS) from alignment at sc0007042:431..1209+

>TCONS_00045138 ID=TCONS_00045138|Name=TCONS_00045138|organism=Clytia hemisphaerica|type=CDS|length=768bp|location=Sequence derived from alignment at sc0007042:431..1209+ (Clytia hemisphaerica)
TTATCATATAGATTCTTACTCTCCAGCTGCAAGCTCCCTGATGGATATAC
AAAAAATGCAAGTATCCCAATGGAAATGATCAAAGGGAAAGAAAGTTACA
GCCAATGTAAGATTTACCAAGACTTTAACTCCACCAGTGGATCGACTGAA
GGTTGTCCAAACGGATGGAACTTCATATTGAATGGTAAAGAATCAACAAT
TGTAAATGAGTGGTCACTTGTTTGCGACCAAAAATATTTGGTTTCCCTTG
CCACAACCATTTATTTCACCGGCGTGATGATCGGGGGTGCAGTTTTCGGA
CAGCTTGGTGATAAATTCGGACGGAAACCAATTACATTGATATGTTTGTA
TTCACATATTGCATTGGCTGTTGGTGTTTATTTCTTATCATATAGATTCT
TACTCTCCAGCTGCAAGCTCCCTGATGGATATACAAAAAATGCAAGTATC
CCAATGGAAATGATCAAAGGGAAAGAAAGTTACAGCCAATGTAAGATTTA
CCAAGACTTTAACTCCACCAGTGGATCGACTGAAGGTTGTCCAAACGGAT
GGAACTTCATATTGAATGGTAAAGAATCAACAATTGTAAATGAGTGGTCA
CTTGTTTGCGACCAAAAATATTTGGTTTCCCTTGCCACAACCATTTATTT
CACCGGCGTGATGATCGGGGGTGCAGTTTTCGGACAGCTTGGTGATAAAT
TCGGACGGAAACCAATTACATTGATATGTTTGTATTCACATATTGCATTG
GCTGTTGGTGTTTATTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028721XLOC_028721Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045138-proteinTCONS_00045138-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045138-exon-sc0007042-1491911889:431..640TCONS_00045138-exon-sc0007042-1491911889:431..640Clytia hemisphaericaexon
TCONS_00045138-exon-sc0007042-1510915933:431..640TCONS_00045138-exon-sc0007042-1510915933:431..640Clytia hemisphaericaexon
TCONS_00045138-exon-sc0007042-1575043694:431..640TCONS_00045138-exon-sc0007042-1575043694:431..640Clytia hemisphaericaexon
TCONS_00045138-exon-sc0007042-1491911889:1034..1209TCONS_00045138-exon-sc0007042-1491911889:1034..1209Clytia hemisphaericaexon
TCONS_00045138-exon-sc0007042-1510915933:1034..1209TCONS_00045138-exon-sc0007042-1510915933:1034..1209Clytia hemisphaericaexon
TCONS_00045138-exon-sc0007042-1575043694:1034..1209TCONS_00045138-exon-sc0007042-1575043694:1034..1209Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0007042supercontigsc0007042:431..1209 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.08138	5.07087	2.33095	0.570989	1.83498	1.00427	8.54688	10.9353	3.93271	1.96483	4.68355	5.04955	15.4944	21.281	3.97092	6.84551	16.8246	13.3563	19.6408	16.6594	11.5625	15.2427	5.43976	5.94407	12.7383	14.5284	5.23474	5.5223	1.82476	2.55458
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR027378Nucleotide_channel_N
IPR005828MFS_sugar_transport-like
IPR020846MFS_dom
Vocabulary: Molecular Function
TermDefinition
GO:0022857transmembrane transporter activity
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
Vocabulary: Biological Process
TermDefinition
GO:0055085transmembrane transport
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055085 transmembrane transport
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0022857 transmembrane transporter activity
Blast
[Close]
BLAST of TCONS_00045138 vs. Swiss-Prot (Human)
Match: S22A4 (Solute carrier family 22 member 4 OS=Homo sapiens GN=SLC22A4 PE=1 SV=3)

HSP 1 Score: 79.337 bits (194), Expect = 9.760e-18
Identity = 44/140 (31.43%), Postives = 70/140 (50.00%), Query Frame = 1 
Query:   28 CKLPDGYT-----KNASIPMEMIKGKESYSQCKIYQ----------------DFNSTSGSTEGCPNGWNFILNGKESTIVNEWSLVCDQKYLVSLATTIYFTGVMIGGAVFGQLGDKFGRKPITLICLYSHIALAVGVYF 384
            C++PD        +N S+P+ +  G+E    C  Y+                D +      E C +GW F  +   ST+V EW+LVC+  + V L T+++F GV++G  V GQL D+FGRK +    L++ +A+  G  F
Sbjct:   50 CRVPDAANLSSAWRNNSVPLRLRDGREVPHSCSRYRLATIANFSALGLEPGRDVDLGQLEQESCLDGWEFSQDVYLSTVVTEWNLVCEDNWKVPLTTSLFFVGVLLGSFVSGQLSDRFGRKNV----LFATMAVQTGFSF 185
The following BLAST results are available for this feature:
BLAST of TCONS_00045138 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
S22A49.760e-1831.43Solute carrier family 22 member 4 OS=Homo sapiens ... [more]
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