TCONS_00045136 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045136
Unique NameTCONS_00045136
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length383

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045136 ID=TCONS_00045136|Name=TCONS_00045136|organism=Clytia hemisphaerica|type=transcript|length=383bp
TTTGATGAGTTGACCAATGTTGTACAATCTTCGGTGTTGTTGTGGTGCTC
TTTTCGTGCGTTGTTTATATGAATCATGTCATCTTTTGTGTTAATATTAG
AGAATACTATACTACTACCATCAGTGTTATTAGACATGCTTTGGTCGCTT
TGGCTCATATGTTCTCTGTTCGAAAAATATTACCAATCACAACAATCACA
AAACTTATCTCGTTATCCTCATAACATCATTCATTACTCATCATATATTT
TCAAACTATTAGCGTAATCAGTCTGAGCGATTTCTTTAACCTGAATCTTT
TTGAAGTTATCTTTAGTAAATCGTATTTAGCTTGTCTTCTGTGCCGATAT
CTAAATTTGCTCATAACTTGCTGCCATTTACAT
Run BLAST on NCBI

transcript from alignment at sc0007038:828..1210

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045136 ID=TCONS_00045136|Name=TCONS_00045136|organism=Clytia hemisphaerica|type=transcript|length=383bp|location=Sequence derived from alignment at sc0007038:828..1210 (Clytia hemisphaerica)
ATGTAAATGGCAGCAAGTTATGAGCAAATTTAGATATCGGCACAGAAGAC
AAGCTAAATACGATTTACTAAAGATAACTTCAAAAAGATTCAGGTTAAAG
AAATCGCTCAGACTGATTACGCTAATAGTTTGAAAATATATGATGAGTAA
TGAATGATGTTATGAGGATAACGAGATAAGTTTTGTGATTGTTGTGATTG
GTAATATTTTTCGAACAGAGAACATATGAGCCAAAGCGACCAAAGCATGT
CTAATAACACTGATGGTAGTAGTATAGTATTCTCTAATATTAACACAAAA
GATGACATGATTCATATAAACAACGCACGAAAAGAGCACCACAACAACAC
CGAAGATTGTACAACATTGGTCAACTCATCAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028719XLOC_028719Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045136-exon-sc0007038-1491911889:828..1210TCONS_00045136-exon-sc0007038-1491911889:828..1210Clytia hemisphaericaexon
TCONS_00045136-exon-sc0007038-1510915933:828..1210TCONS_00045136-exon-sc0007038-1510915933:828..1210Clytia hemisphaericaexon
TCONS_00045136-exon-sc0007038-1575043694:828..1210TCONS_00045136-exon-sc0007038-1575043694:828..1210Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0007038supercontigsc0007038:828..1210 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	1.04856	0.868639	2.10791	0.8513	0	1.61437	1.94973	0.47445	0.608629	2.16792	1.75188	1.00646	0	0.680424	7.54427	9.10511	1.86011	3.07328	1.79509	0.901817	0.279581	0	1.35785	2.00228
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045136 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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