TCONS_00045135 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045135
Unique NameTCONS_00045135
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length472

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045135 ID=TCONS_00045135|Name=TCONS_00045135|organism=Clytia hemisphaerica|type=transcript|length=472bp
CGACTCATTTTTCCCCTAAAAAGAACGTGAACATCAGTTATTTGTGATCG
TGGCCTTATATAAAGGAATATATAATGTATTGATTTAGCTGATGATTGTC
GTCCGAACTTAAAGTTCTGAAACAATAAATCAAAGTCTCTTTCCTTTAAT
TTGAACAAGCTCTGATATCATCGAGCACTCTCGACAGATAAGAAGAAAAT
AGACTTGTATAATGTATTATATAAATTTCAATGTTGGGatagaaagaatc
aaaaagtttgGTACAATTCATTAAGATACAGGAAATATGTGTCTTGTTTA
ATTTAACCTAGCAAAAACCAGCATTAAAATGCCCggaataaataaaatta
aattaaatttgatcactCCGTTAGTGCTGAGTGGGCAGCCGAGCGCTTAA
GTGCGGtacgaaagcgaataaaatctaatacaatttaATCAATTGAGCGT
AATCTAACATAATCGATTaaaa
Run BLAST on NCBI

transcript from alignment at sc0007035:480..951

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045135 ID=TCONS_00045135|Name=TCONS_00045135|organism=Clytia hemisphaerica|type=transcript|length=472bp|location=Sequence derived from alignment at sc0007035:480..951 (Clytia hemisphaerica)
ttttAATCGATTATGTTAGATTACGCTCAATTGATtaaattgtattagat
tttattcgctttcgtaCCGCACTTAAGCGCTCGGCTGCCCACTCAGCACT
AACGGagtgatcaaatttaatttaattttatttattccGGGCATTTTAAT
GCTGGTTTTTGCTAGGTTAAATTAAACAAGACACATATTTCCTGTATCTT
AATGAATTGTACcaaactttttgattctttctatCCCAACATTGAAATTT
ATATAATACATTATACAAGTCTATTTTCTTCTTATCTGTCGAGAGTGCTC
GATGATATCAGAGCTTGTTCAAATTAAAGGAAAGAGACTTTGATTTATTG
TTTCAGAACTTTAAGTTCGGACGACAATCATCAGCTAAATCAATACATTA
TATATTCCTTTATATAAGGCCACGATCACAAATAACTGATGTTCACGTTC
TTTTTAGGGGAAAAATGAGTCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028718XLOC_028718Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045135-exon-sc0007035-1491911889:480..951TCONS_00045135-exon-sc0007035-1491911889:480..951Clytia hemisphaericaexon
TCONS_00045135-exon-sc0007035-1510915933:480..951TCONS_00045135-exon-sc0007035-1510915933:480..951Clytia hemisphaericaexon
TCONS_00045135-exon-sc0007035-1575043694:480..951TCONS_00045135-exon-sc0007035-1575043694:480..951Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0007035supercontigsc0007035:480..951 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.131545	0.152737	0	0.553945	0.143752	0.867153	0.487091	0.568373	0.704022	3.0067	0.37717	0.628007	0.199927	0.153197	0.167664	0.405065	0.209264	0.162938	0.164538	0.799997	0.190851	0	0.281234	0.289664	1.22162	0.18497	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045135 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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