TCONS_00045132 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045132
Unique NameTCONS_00045132
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length698

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045132 ID=TCONS_00045132|Name=TCONS_00045132|organism=Clytia hemisphaerica|type=transcript|length=698bp
ccccccccaagaccTTATTTAGGACCCCTCTTTATTAATGTATAAGaatt
ttatcagctttcaaaaaaaaggttccctattctgctctaaatagcctgat
tttagccttcATTTACCTTTTTATGGGGTTTGgaaagtacaatttccaat
cCCCTGGCAATTAGCCCCACCCCCTGTTtgtttaccttaaaggaagaaat
tggcggatttgactgaaatccaaaatttcttttttctgcaatccgccaaa
tttagttttttcgtccatccgccaaattaaattccctcggaaaaaacttt
ttcttcctttaaggtagaacCTAAGAGTACCTTGTTGCTCTATGACTGTT
TTAACCACCTGTTTCAAATAGACATCCCTCTTTGAGGGGAGGTGCTTATT
CAAAGTACATTATCTAgaattttgttttataaataaaattgtCACTCTTT
TTTTCAGATGCAAAACGATTAATTGGACGACACTTCACTGAAAAATCAGT
TACTGAAGACATCAAGAACTGGCCATTCGAGGTTGTTAATGTTGACTCAA
AACCAAAGATCCAAGTCGAATACAAAGGTGAAACCAAAAAGTTTTTCCCT
GAAGAAATCTCATCCATGGTTCTCACCAAAATGAAGGAAGTTGCTGAATC
TTATTTGGGCAAAACTATCACTGATGCTGTAATTACCGTCCCTGCTTA
Run BLAST on NCBI

transcript from alignment at sc0007024:9..1225+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045132 ID=TCONS_00045132|Name=TCONS_00045132|organism=Clytia hemisphaerica|type=transcript|length=1217bp|location=Sequence derived from alignment at sc0007024:9..1225+ (Clytia hemisphaerica)
ccccccccaagaccTTATTTAGGACCCCTCTTTATTAATGTATAAGaatt
ttatcagctttcaaaaaaaaggttccctattctgctctaaatagcctgat
tttagccttcATTTACCTTTTTATGGGGTTTGgaaagtacaatttccaat
cCCCTGGCAATTAGCCCCACCCCCTGTTtgtttaccttaaaggaagaaat
tggcggatttgactgaaatccaaaatttcttttttctgcaatccgccaaa
tttagttttttcgtccatccgccaaattaaattccctcggaaaaaacttt
ttcttcctttaaggtagaacCTAAGAGTACCTTGTTGCTCTATGACTGTT
TTAACCACCTGTTTCAAATAGACATCCCTCTTTGAGGGGAGGTGCTTATT
CAAAGTACATTATCTAgaattttgttttataaataaaattgtCACTCTTT
TTTTCAGATGCAAAACGATTAATTGGACGACACTTCACTGAAAAATCAGT
TACTGAAGACATCAAGAACTGGCCATTCGAGGTAATTTACTTATTGACTA
TCTTAGGGGACTTATTTTGACAGGAGTTTGTTGGTATTTTGCCTTAATAA
CTTCATGAGTTCACAAGTAAGCTTCCAATAAGGCAAAACAGATATACAAT
GTCAtttaccaaaattagttcccgccaaaattttaaaaatacatcaataa
ttaaaaaatttcaggtttaaatttTTGCCGCTCGTCAAAAATTCTATTCT
TCCAATATCCAATAGGAGGGAATCCTCAAAAGCCTTCTGAAAATCTTAAT
acttgtttgttgttgttgattaaatgttttatttttacataagtgttccc
gtttccatatcagacacatgtttcatatcaggacaggtCTGCTTATTGTT
ATGTTGTGCTGATATATAAGCTTCTACTGAATAATCTTTCCCCACATCTG
TCAATTCGATATCAAAAAACTTGTTAATTTGAtttgagtaagcaaacaat
atctctcttatttaaaaacaaaacctttaatgacATTCATTTTTTTGTAG
GTTGTTAATGTTGACTCAAAACCAAAGATCCAAGTCGAATACAAAGGTGA
AACCAAAAAGTTTTTCCCTGAAGAAATCTCATCCATGGTTCTCACCAAAA
TGAAGGAAGTTGCTGAATCTTATTTGGGCAAAACTATCACTGATGCTGTA
ATTACCGTCCCTGCTTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028715XLOC_028715Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045132-exon-sc0007024-1491911889:9..539TCONS_00045132-exon-sc0007024-1491911889:9..539Clytia hemisphaericaexon
TCONS_00045132-exon-sc0007024-1510915933:9..539TCONS_00045132-exon-sc0007024-1510915933:9..539Clytia hemisphaericaexon
TCONS_00045132-exon-sc0007024-1575043694:9..539TCONS_00045132-exon-sc0007024-1575043694:9..539Clytia hemisphaericaexon
TCONS_00045132-exon-sc0007024-1491911889:1059..1225TCONS_00045132-exon-sc0007024-1491911889:1059..1225Clytia hemisphaericaexon
TCONS_00045132-exon-sc0007024-1510915933:1059..1225TCONS_00045132-exon-sc0007024-1510915933:1059..1225Clytia hemisphaericaexon
TCONS_00045132-exon-sc0007024-1575043694:1059..1225TCONS_00045132-exon-sc0007024-1575043694:1059..1225Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0007024supercontigsc0007024:9..1225 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
451.928	471.112	365.821	345.589	493.58	389.943	572.356	609.179	557.624	347.951	809.376	743.236	1363.86	1137.1	954.081	848.178	601.858	864.394	465.435	690.48	615.413	670.02	462.001	504.469	2300.81	2178.56	607.793	924.084	449.642	496.219
Blast
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BLAST of TCONS_00045132 vs. Swiss-Prot (Human)
Match: HSP7C (Heat shock cognate 71 kDa protein OS=Homo sapiens GN=HSPA8 PE=1 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 4.546e-33
Identity = 57/80 (71.25%), Postives = 69/80 (86.25%), Query Frame = 1 
Query:  457 DAKRLIGRHFTEKSVTEDIKNWPFEVVNVDSKPKIQVEYKGETKKFFPEEISSMVLTKMKEVAESYLGKTITDAVITVPA 696
            DAKRLIGR F +  V  D+K+WPF VVN   +PK+QVEYKGETK F+PEE+SSMVLTKMKE+AE+YLGKT+T+AV+TVPA
Sbjct:   69 DAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVSSMVLTKMKEIAEAYLGKTVTNAVVTVPA 148
The following BLAST results are available for this feature:
BLAST of TCONS_00045132 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
HSP7C4.546e-3371.25Heat shock cognate 71 kDa protein OS=Homo sapiens ... [more]
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