TCONS_00045131 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045131
Unique NameTCONS_00045131
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length307

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045131 ID=TCONS_00045131|Name=TCONS_00045131|organism=Clytia hemisphaerica|type=transcript|length=307bp
TCATCATCTGGATGAACACAGTCGGACCATATCACAATCGACAAGAAACT
TATGAATATTACTCACTGCCATTTTGCAAAGGACACAAAAAGACAATCAG
CCATTATCATGAAACGTTAGGGGAAGCTCTTCAAGGTGTGGAATTAGAAT
TCAGTGGATTGGATGTGAAatttaaagAGGATGTAAGTTTGACACAATTT
TGCTCAGTTAAGCTGACACCAGCAAATTATGATGCATTTTCATACGCGAT
CAGACATAGATACTGGTATCAAATGTATATTGATGATTTACCAGTCTGGG
GTAAGTG
Run BLAST on NCBI

protein sequence of TCONS_00045131-protein

>TCONS_00045131-protein ID=TCONS_00045131-protein|Name=TCONS_00045131-protein|organism=Clytia hemisphaerica|type=polypeptide|length=101bp
IIWMNTVGPYHNRQETYEYYSLPFCKGHKKTISHYHETLGEALQGVELEF
SGLDVKFKEDVSLTQFCSVKLTPANYDAFSYAIRHRYWYQMYIDDLPVWG
K
Run BLAST on NCBI

transcript from alignment at sc0007022:1..1038+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045131 ID=TCONS_00045131|Name=TCONS_00045131|organism=Clytia hemisphaerica|type=transcript|length=1038bp|location=Sequence derived from alignment at sc0007022:1..1038+ (Clytia hemisphaerica)
TCATCATCTGGATGAACACAGTCGGACCATATCACAATCGACAAGAAACT
TATGAATATTACTCACTGCCATTTTGCAAAGGACACAAAAAGACAATCAG
CCATTATCATGAAACGTTAGGGGAAGCTCTTCAAGGTGTGGAATTAGAAT
TCAGTGGATTGGATGTGAAatttaaaggtttgttttatttattataatca
atcatatttgtttttttcgttTAAACAATATACATTGTGCTTAATGTTTA
TGCATGGCTTCATCCATGATCCCCCTTAAACAGCATGTTACTCCTTGTCC
ATCCCCCCCCCCtcaattttggaatttcataTTTACTGTGCCATTTATTT
CGAAATTATATGTAAACAAACACGATCATGCTTTTGACATTGATGTGATT
GCTCTCGAGATTATGATTTGTCTTCAATATAAGATTGGAGCATGAAGCTT
CTAAGCCGAATTAGCCTAtttaaaagaattcttttgcaagttcactgcag
taatcaacttTTTATGGTTGAGCACTCTATTGCGAATGGAGTTATAAGTT
TGACAAAGAAAAGAATAATGGAGAAgagttcttgaattcccaagtTGAAT
TGAATAATTATAACTTTTTTCTTGAAGGGAATTCTACACatattcaaatt
atttggaTTTCACAAGAATTACCCCCTCCCCTcaaattacttttttcttt
ggTCTAAACATAGATAACCTCTCATTTATGAAAATCCCAAAAGTTTGCCC
cttaaaattttgagaaaattccagTCTTATTTTAAGGCTGAAACCATGAT
ATGCCGATAATTCAGTAACCAGCAATATAATCCCTTTCTTGAACAAATTG
ACCATCAAAGGTGTAGAACGGTGTAAAACAGTTGTAATCATTTCCTTTTT
CATCATAGAGGATGTAAGTTTGACACAATTTTGCTCAGTTAAGCTGACAC
CAGCAAATTATGATGCATTTTCATACGCGATCAGACATAGATACTGGTAT
CAAATGTATATTGATGATTTACCAGTCTGGGGTAAGTG

Coding sequence (CDS) from alignment at sc0007022:1..1038+

>TCONS_00045131 ID=TCONS_00045131|Name=TCONS_00045131|organism=Clytia hemisphaerica|type=CDS|length=606bp|location=Sequence derived from alignment at sc0007022:1..1038+ (Clytia hemisphaerica)
ATCATCTGGATGAACACAGTCGGACCATATCACAATCGACAAGAAACTTA
TGAATATTACTCACTGCCATTTTGCAAAGGACACAAAAAGACAATCAGCC
ATTATCATGAAACGTTAGGGGAAGCTCTTCAAGGTGTGGAATTAGAATTC
AGTGGATTGGATGTGAAatttaaagAGGATGTAAGTTTGACACAATTTTG
CTCAGTTAAGCTGACACCAGCAAATTATGATGCATTTTCATACGCGATCA
GACATAGATACTGGTATCAAATGTATATTGATGATTTACCAGTCTGGGGT
AAGATCATCTGGATGAACACAGTCGGACCATATCACAATCGACAAGAAAC
TTATGAATATTACTCACTGCCATTTTGCAAAGGACACAAAAAGACAATCA
GCCATTATCATGAAACGTTAGGGGAAGCTCTTCAAGGTGTGGAATTAGAA
TTCAGTGGATTGGATGTGAAatttaaagAGGATGTAAGTTTGACACAATT
TTGCTCAGTTAAGCTGACACCAGCAAATTATGATGCATTTTCATACGCGA
TCAGACATAGATACTGGTATCAAATGTATATTGATGATTTACCAGTCTGG
GGTAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028714XLOC_028714Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045131-proteinTCONS_00045131-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045131-exon-sc0007022-1491911889:1..177TCONS_00045131-exon-sc0007022-1491911889:1..177Clytia hemisphaericaexon
TCONS_00045131-exon-sc0007022-1510915933:1..177TCONS_00045131-exon-sc0007022-1510915933:1..177Clytia hemisphaericaexon
TCONS_00045131-exon-sc0007022-1575043694:1..177TCONS_00045131-exon-sc0007022-1575043694:1..177Clytia hemisphaericaexon
TCONS_00045131-exon-sc0007022-1491911889:909..1038TCONS_00045131-exon-sc0007022-1491911889:909..1038Clytia hemisphaericaexon
TCONS_00045131-exon-sc0007022-1510915933:909..1038TCONS_00045131-exon-sc0007022-1510915933:909..1038Clytia hemisphaericaexon
TCONS_00045131-exon-sc0007022-1575043694:909..1038TCONS_00045131-exon-sc0007022-1575043694:909..1038Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0007022supercontigsc0007022:1..1038 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
187.771	197.924	142.555	138.666	184.425	138.025	247.921	246.471	193.023	187.686	134.034	153.727	102.12	81.9617	123.979	121.35	147.395	153.705	75.2774	93.3684	73.1086	96.7422	102.462	118.798	90.1183	109.202	90.7845	70.4156	138.137	113.738
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR004240EMP70
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane
Blast
[Close]
BLAST of TCONS_00045131 vs. Swiss-Prot (Human)
Match: TM9S3 (Transmembrane 9 superfamily member 3 OS=Homo sapiens GN=TM9SF3 PE=1 SV=2)

HSP 1 Score: 167.548 bits (423), Expect = 9.971e-50
Identity = 73/100 (73.00%), Postives = 85/100 (85.00%), Query Frame = 3 
Query:    3 IIWMNTVGPYHNRQETYEYYSLPFCKGHKKTISHYHETLGEALQGVELEFSGLDVKFKEDVSLTQFCSVKLTPANYDAFSYAIRHRYWYQMYIDDLPVWG 302
            ++WMNTVGPYHNRQETY+Y+SLPFC G KK+ISHYHETLGEALQGVELEFSGLD+KFK+DV    +C + L     DAF YAI++ YWYQMYIDDLP+WG
Sbjct:   42 VLWMNTVGPYHNRQETYKYFSLPFCVGSKKSISHYHETLGEALQGVELEFSGLDIKFKDDVMPATYCEIDLDKEKRDAFVYAIKNHYWYQMYIDDLPIWG 141
The following BLAST results are available for this feature:
BLAST of TCONS_00045131 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TM9S39.971e-5073.00Transmembrane 9 superfamily member 3 OS=Homo sapie... [more]
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