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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00045122 ID=TCONS_00045122|Name=TCONS_00045122|organism=Clytia hemisphaerica|type=transcript|length=1000bp
CGGGTAAGAGACGTTTCATTTCCTTTTTGTGTAAGGCGGCTGGTGAAAGT
TTGCTGACAAATACTAAGATGTCGAAATGAAATTgagagaaattattttt
tgtttgaagatGAATTTcgaatttctctttttcttgtAGAAAACCCTGTG
ATTGCCGCTCCGCGTCCGGTGAGCAAATTGATGCAAGGAATAACAGCTAT
CAAAAGCTACATGGAAAGATTTGGTTACGGTTTGTTCGATGGTCATATTT
ATAAACGCGCTCCAGCTGCAAAGTTTACATACGTGTATTGCTCATCAGTG
CTTGACTTCGTCCATTTCACCCTTGGTAGTCCAGACGTGGCAGATCAGAT
CGGTTCTCAAGTCAACCCTATCATCAATCTGCTATCGGTATCTTCATGTC
GTGTTATCAAGCCGATCAAAATAGATTACAACTTCATCGAAGTGACGCCT
TTCGGAACGTGTTTCAATATACGCGAGAAATGTTTTCAAGTTGATCCTGT
CGATTTGGAAGGTTCGCCAAGAGCTTTCGTAAAGTACACGTACGACGAAA
AACGCACTCCGAATCCAAAACCCTTTGTACAAGGGGTGGAGAACTCCTTT
GGTAACCCTGTGATTTTACGTAAATTTTACAAGAAATATTATCAACTCCT
CATGCACGGCCAGTTCCCTCACAAGGAGAGCAAACTTTGTCTTGTTGGGC
CAGCCGACTCTGGCAAGACCAGCTGGTTTGCCCCATTCCAAGGCGTCATC
CCTGTGCGGTACATCGCCGGTGTAATGAACGACGGTCGCTTTTCCGCCGC
CCTCATAAGCAACAATACCCAAATATGTATGATGGACGAATGGACACCGG
ACAGCTTGTCGTGTGAGGATGCAAAACGTGTGCTGCAAGGCGGAATGAAT
TTCTTACCTCAAAAACACAAATCCGGTCTTCGCGTAAATTACAACTCGGG
ATTTTTCATAACGACGAACGTGTATCCCGACTTTGGAAACGAGCGTGACA Run BLAST on NCBI protein sequence of TCONS_00045122-protein >TCONS_00045122-protein ID=TCONS_00045122-protein|Name=TCONS_00045122-protein|organism=Clytia hemisphaerica|type=polypeptide|length=273bp
MQGITAIKSYMERFGYGLFDGHIYKRAPAAKFTYVYCSSVLDFVHFTLGS
PDVADQIGSQVNPIINLLSVSSCRVIKPIKIDYNFIEVTPFGTCFNIREK
CFQVDPVDLEGSPRAFVKYTYDEKRTPNPKPFVQGVENSFGNPVILRKFY
KKYYQLLMHGQFPHKESKLCLVGPADSGKTSWFAPFQGVIPVRYIAGVMN
DGRFSAALISNNTQICMMDEWTPDSLSCEDAKRVLQGGMNFLPQKHKSGL
RVNYNSGFFITTNVYPDFGNERD Run BLAST on NCBI transcript from alignment at sc0006991:2..1257+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00045122 ID=TCONS_00045122|Name=TCONS_00045122|organism=Clytia hemisphaerica|type=transcript|length=1256bp|location=Sequence derived from alignment at sc0006991:2..1257+ (Clytia hemisphaerica)
CGGGTAAGAGACGTTTCATTTCCTTTTTGTGTAAGGCGGCTGGTGAAAGT
TTGCTGACAAATACTAAGATGTCGAAATGAAATTgagagaaattattttt
tgtttgaagatGAATTTcgaatttctctttttcttgtAGAAAACCCTGTG
ATTGCCGCTCCGCGTCCGGTGAGCAAATTGATGCAAGGAATAACAGCTAT
CAAAAGCTACATGGAAAGATTTGGTTACGGTTTGTTCGATGGTCATATTT
ATAAACGCGCTCCAGCTGCAAAGTTTACATACGTGTATTGCTCATCAGTG
CTTGACTTCGTCCATTTCACCCTTGGTAGTCCAGACGTGGCAGATCAGAT
CGGTTCTCAAGTCAACCCTATCATCAATCTGCTATCGGTATCTTCATGTC
GTGTTATCAAGCCGATCAAAATAGATTACAACTTCATCGAAGTGACGCCT
TTCGGAACGTGTTTCAATATACGCGAGAAATGTTTTCAAGTTGATCCTGT
CGATTTGGAAGGTATGTAGCatttcctttttgtttttacataagagACGA
AAATAGACTGCAGAACAGCTGATATTGAATTGTACCAGGACATTTAAGAT
CTTTGAATTTAAATTTCCTTTCTGTGTTTCGTTACTTTAGGTTCGCCAAG
AGCTTTCGTAAAGTACACGTACGACGAAAAACGCACTCCGAATCCAAAAC
CCTTTGTACAAGGGGTGGAGAACTCCTTTGGTAACCCTGTGATTTTACGT
AAATTTTACAAGAAATATTATCAACTCCTCATGCACGGCCAGTTCCCTCA
CAAGGAGAGCAAACTTTGTCTTGTTGGGCCAGCCGACTCTGGCAAGACCA
GCTGGTTTGCCCCATTCCAAGGCGTCATCCCTGTGCGGTACATCGCCGGT
GTAATGAACGACGGTCGCTTTTCCGCCGCCCTCATAAGCAACAATACCCA
AATATGTATGATGGACGAATGGACACCGGACAGCTTGTCGTGTGAGGATG
CAAAACGTGTGCTGCAAGGTGAGTTGAAACTATTTTGAGCTTTCCCATAG
ACCCCTTCGATATGCTTTCATGCTACTTGTGGTTCTGCACTTAGTAAAGG
AAATTCTTCGGTCATTAATCCATCCTCGTTTTTTCTCCCTTTCAGGCGGA
ATGAATTTCTTACCTCAAAAACACAAATCCGGTCTTCGCGTAAATTACAA
CTCGGGATTTTTCATAACGACGAACGTGTATCCCGACTTTGGAAACGAGC
GTGACA Coding sequence (CDS) from alignment at sc0006991:2..1257+ >TCONS_00045122 ID=TCONS_00045122|Name=TCONS_00045122|organism=Clytia hemisphaerica|type=CDS|length=2457bp|location=Sequence derived from alignment at sc0006991:2..1257+ (Clytia hemisphaerica)
ATGCAAGGAATAACAGCTATCAAAAGCTACATGGAAAGATTTGGTTACGG
TTTGTTCGATGGTCATATTTATAAACGCGCTCCAGCTGCAAAGTTTACAT
ACGTGTATTGCTCATCAGTGCTTGACTTCGTCCATTTCACCCTTGGTAGT
CCAGACGTGGCAGATCAGATCGGTTCTCAAGTCAACCCTATCATCAATCT
GCTATCGGTATCTTCATGTCGTGTTATCAAGCCGATCAAAATAGATTACA
ACTTCATCGAAGTGACGCCTTTCGGAACGTGTTTCAATATACGCGAGAAA
TGTTTTCAAGTTGATCCTGTCGATTTGGAAGGTTCGCCAAGAGCTTTCGT
AAAGTACACGTACGACGAAAAACGCACTCCGAATCCAAAACCCTTTGTAC
AAGGGGTGGAGAACTCCTTTGGTAACCCTGTGATTTTACGTAAATTTTAC
AAGAAATATTATCAACTCCTCATGCACGGCCAGTTCCCTCACAAGGAGAG
CAAACTTTGTCTTGTTGGGCCAGCCGACTCTGGCAAGACCAGCTGGTTTG
CCCCATTCCAAGGCGTCATCCCTGTGCGGTACATCGCCGGTGTAATGAAC
GACGGTCGCTTTTCCGCCGCCCTCATAAGCAACAATACCCAAATATGTAT
GATGGACGAATGGACACCGGACAGCTTGTCGTGTGAGGATGCAAAACGTG
TGCTGCAAGGCGGAATGAATTTCTTACCTCAAAAACACAAATCCGGTCTT
CGCGTAAATTACAACTCGGGATTTTTCATAACGACGAACGTGTATCCCGA
CTTTGGAAACGAGCGTGACATGCAAGGAATAACAGCTATCAAAAGCTACA
TGGAAAGATTTGGTTACGGTTTGTTCGATGGTCATATTTATAAACGCGCT
CCAGCTGCAAAGTTTACATACGTGTATTGCTCATCAGTGCTTGACTTCGT
CCATTTCACCCTTGGTAGTCCAGACGTGGCAGATCAGATCGGTTCTCAAG
TCAACCCTATCATCAATCTGCTATCGGTATCTTCATGTCGTGTTATCAAG
CCGATCAAAATAGATTACAACTTCATCGAAGTGACGCCTTTCGGAACGTG
TTTCAATATACGCGAGAAATGTTTTCAAGTTGATCCTGTCGATTTGGAAG
GTTCGCCAAGAGCTTTCGTAAAGTACACGTACGACGAAAAACGCACTCCG
AATCCAAAACCCTTTGTACAAGGGGTGGAGAACTCCTTTGGTAACCCTGT
GATTTTACGTAAATTTTACAAGAAATATTATCAACTCCTCATGCACGGCC
AGTTCCCTCACAAGGAGAGCAAACTTTGTCTTGTTGGGCCAGCCGACTCT
GGCAAGACCAGCTGGTTTGCCCCATTCCAAGGCGTCATCCCTGTGCGGTA
CATCGCCGGTGTAATGAACGACGGTCGCTTTTCCGCCGCCCTCATAAGCA
ACAATACCCAAATATGTATGATGGACGAATGGACACCGGACAGCTTGTCG
TGTGAGGATGCAAAACGTGTGCTGCAAGGCGGAATGAATTTCTTACCTCA
AAAACACAAATCCGGTCTTCGCGTAAATTACAACTCGGGATTTTTCATAA
CGACGAACGTGTATCCCGACTTTGGAAACGAGCGTGACATGCAAGGAATA
ACAGCTATCAAAAGCTACATGGAAAGATTTGGTTACGGTTTGTTCGATGG
TCATATTTATAAACGCGCTCCAGCTGCAAAGTTTACATACGTGTATTGCT
CATCAGTGCTTGACTTCGTCCATTTCACCCTTGGTAGTCCAGACGTGGCA
GATCAGATCGGTTCTCAAGTCAACCCTATCATCAATCTGCTATCGGTATC
TTCATGTCGTGTTATCAAGCCGATCAAAATAGATTACAACTTCATCGAAG
TGACGCCTTTCGGAACGTGTTTCAATATACGCGAGAAATGTTTTCAAGTT
GATCCTGTCGATTTGGAAGGTTCGCCAAGAGCTTTCGTAAAGTACACGTA
CGACGAAAAACGCACTCCGAATCCAAAACCCTTTGTACAAGGGGTGGAGA
ACTCCTTTGGTAACCCTGTGATTTTACGTAAATTTTACAAGAAATATTAT
CAACTCCTCATGCACGGCCAGTTCCCTCACAAGGAGAGCAAACTTTGTCT
TGTTGGGCCAGCCGACTCTGGCAAGACCAGCTGGTTTGCCCCATTCCAAG
GCGTCATCCCTGTGCGGTACATCGCCGGTGTAATGAACGACGGTCGCTTT
TCCGCCGCCCTCATAAGCAACAATACCCAAATATGTATGATGGACGAATG
GACACCGGACAGCTTGTCGTGTGAGGATGCAAAACGTGTGCTGCAAGGCG
GAATGAATTTCTTACCTCAAAAACACAAATCCGGTCTTCGCGTAAATTAC
AACTCGGGATTTTTCATAACGACGAACGTGTATCCCGACTTTGGAAACGA
GCGTGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00045122-exon-sc0006991-1491911889:2..512 | TCONS_00045122-exon-sc0006991-1491911889:2..512 | Clytia hemisphaerica | exon |
| TCONS_00045122-exon-sc0006991-1510915933:2..512 | TCONS_00045122-exon-sc0006991-1510915933:2..512 | Clytia hemisphaerica | exon |
| TCONS_00045122-exon-sc0006991-1575043694:2..512 | TCONS_00045122-exon-sc0006991-1575043694:2..512 | Clytia hemisphaerica | exon |
| TCONS_00045122-exon-sc0006991-1491911889:642..1019 | TCONS_00045122-exon-sc0006991-1491911889:642..1019 | Clytia hemisphaerica | exon |
| TCONS_00045122-exon-sc0006991-1510915933:642..1019 | TCONS_00045122-exon-sc0006991-1510915933:642..1019 | Clytia hemisphaerica | exon |
| TCONS_00045122-exon-sc0006991-1575043694:642..1019 | TCONS_00045122-exon-sc0006991-1575043694:642..1019 | Clytia hemisphaerica | exon |
| TCONS_00045122-exon-sc0006991-1491911889:1147..1257 | TCONS_00045122-exon-sc0006991-1491911889:1147..1257 | Clytia hemisphaerica | exon |
| TCONS_00045122-exon-sc0006991-1510915933:1147..1257 | TCONS_00045122-exon-sc0006991-1510915933:1147..1257 | Clytia hemisphaerica | exon |
| TCONS_00045122-exon-sc0006991-1575043694:1147..1257 | TCONS_00045122-exon-sc0006991-1575043694:1147..1257 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0006991 | supercontig | sc0006991:2..1257 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR027417 | P-loop_NTPase |
Blast
The following BLAST results are available for this feature:
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