TCONS_00045120 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045120
Unique NameTCONS_00045120
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length331

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045120 ID=TCONS_00045120|Name=TCONS_00045120|organism=Clytia hemisphaerica|type=transcript|length=331bp
cccccccccccccccgtcagctagCAAGCCTAGTACCCCCTGTAGCTTCC
CGAGTTAACagtgagaaaattattttctttatagaGGATGCACTTGATGG
TGTTATTTTCAAAGAATGTTACAAATCATGCCCTAACGAGTGCACTAGAA
AGTCATACACTGTTCAAAAATCATCCGTCAAAATTGGGACAACAGATGTC
TATGAATATGTTCGACCGTTGgtaaaagaattcaaaaatcgAACGCTCAG
GGAAATCGAAGATTATTTTCAGTAAATCCACTTTTCCATACAAAAActtt
aatttgaaaatcttttaatctcccagctggc
Run BLAST on NCBI

transcript from alignment at sc0006982:926..1256

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045120 ID=TCONS_00045120|Name=TCONS_00045120|organism=Clytia hemisphaerica|type=transcript|length=331bp|location=Sequence derived from alignment at sc0006982:926..1256 (Clytia hemisphaerica)
gccagctgggagattaaaagattttcaaattaaagTTTTTGTATGGAAAA
GTGGATTTACTGAAAATAATCTTCGATTTCCCTGAGCGTTcgatttttga
attcttttacCAACGGTCGAACATATTCATAGACATCTGTTGTCCCAATT
TTGACGGATGATTTTTGAACAGTGTATGACTTTCTAGTGCACTCGTTAGG
GCATGATTTGTAACATTCTTTGAAAATAACACCATCAAGTGCATCCtcta
taaagaaaataattttctcactGTTAACTCGGGAAGCTACAGGGGGTACT
AGGCTTGctagctgacggggggggggggggg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028703XLOC_028703Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045120-exon-sc0006982-1491911889:926..1256TCONS_00045120-exon-sc0006982-1491911889:926..1256Clytia hemisphaericaexon
TCONS_00045120-exon-sc0006982-1510915933:926..1256TCONS_00045120-exon-sc0006982-1510915933:926..1256Clytia hemisphaericaexon
TCONS_00045120-exon-sc0006982-1575043694:926..1256TCONS_00045120-exon-sc0006982-1575043694:926..1256Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0006982supercontigsc0006982:926..1256 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0.747722	0.700008	0	0	0	0.387334	7.34911	5.82451	2.14659	1.77201	2.40127	0.894991	10.5101	10.998	2.24924	1.64565	0.666836	0.606251	2.18548	2.50778	0.398735	0.851082	0.322758	0.328839
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045120 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top