TCONS_00045092 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045092
Unique NameTCONS_00045092
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length340

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045092 ID=TCONS_00045092|Name=TCONS_00045092|organism=Clytia hemisphaerica|type=transcript|length=340bp
TCGTCACTAGAAACTCCGTCATATTCCCAATCTGTCGCTTCTGCATTCTC
TTCACCAGACAAGCGATCATAATAACTTCTCTCAATTGGAACATTGCTAT
CTTTAAAAAGTTCTTTTCTAAAATAATATTCGTCTTCTTCATCTTCCCAG
TCTTCAGAATTTAGGTGGTTTTCAATTTGAAGCAATAATTTATCATGCTT
AATTTTCAATCTCCTGATCTTGTCTTTTGAAATCGGACGAATTTTATACA
AATCACCGATTTGTGATTGAAATGTTTCAACTTGATAAAGTTTATCAAAA
TACCACTTACAACTATACTGACAGCTACACCCCATCATCt
Run BLAST on NCBI

protein sequence of TCONS_00045092-protein

>TCONS_00045092-protein ID=TCONS_00045092-protein|Name=TCONS_00045092-protein|organism=Clytia hemisphaerica|type=polypeptide|length=112bp
MMGCSCQYSCKWYFDKLYQVETFQSQIGDLYKIRPISKDKIRRLKIKHDK
LLLQIENHLNSEDWEDEEDEYYFRKELFKDSNVPIERSYYDRLSGEENAE
ATDWEYDGVSSD
Run BLAST on NCBI

transcript from alignment at sc0006888:1019..1358

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045092 ID=TCONS_00045092|Name=TCONS_00045092|organism=Clytia hemisphaerica|type=transcript|length=340bp|location=Sequence derived from alignment at sc0006888:1019..1358 (Clytia hemisphaerica)
aGATGATGGGGTGTAGCTGTCAGTATAGTTGTAAGTGGTATTTTGATAAA
CTTTATCAAGTTGAAACATTTCAATCACAAATCGGTGATTTGTATAAAAT
TCGTCCGATTTCAAAAGACAAGATCAGGAGATTGAAAATTAAGCATGATA
AATTATTGCTTCAAATTGAAAACCACCTAAATTCTGAAGACTGGGAAGAT
GAAGAAGACGAATATTATTTTAGAAAAGAACTTTTTAAAGATAGCAATGT
TCCAATTGAGAGAAGTTATTATGATCGCTTGTCTGGTGAAGAGAATGCAG
AAGCGACAGATTGGGAATATGACGGAGTTTCTAGTGACGA

Coding sequence (CDS) from alignment at sc0006888:1019..1358

>TCONS_00045092 ID=TCONS_00045092|Name=TCONS_00045092|organism=Clytia hemisphaerica|type=CDS|length=336bp|location=Sequence derived from alignment at sc0006888:1019..1358 (Clytia hemisphaerica)
ATGATGGGGTGTAGCTGTCAGTATAGTTGTAAGTGGTATTTTGATAAACT
TTATCAAGTTGAAACATTTCAATCACAAATCGGTGATTTGTATAAAATTC
GTCCGATTTCAAAAGACAAGATCAGGAGATTGAAAATTAAGCATGATAAA
TTATTGCTTCAAATTGAAAACCACCTAAATTCTGAAGACTGGGAAGATGA
AGAAGACGAATATTATTTTAGAAAAGAACTTTTTAAAGATAGCAATGTTC
CAATTGAGAGAAGTTATTATGATCGCTTGTCTGGTGAAGAGAATGCAGAA
GCGACAGATTGGGAATATGACGGAGTTTCTAGTGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028675XLOC_028675Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045092-proteinTCONS_00045092-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045092-exon-sc0006888-1491911889:1019..1358TCONS_00045092-exon-sc0006888-1491911889:1019..1358Clytia hemisphaericaexon
TCONS_00045092-exon-sc0006888-1510915933:1019..1358TCONS_00045092-exon-sc0006888-1510915933:1019..1358Clytia hemisphaericaexon
TCONS_00045092-exon-sc0006888-1575043694:1019..1358TCONS_00045092-exon-sc0006888-1575043694:1019..1358Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0006888supercontigsc0006888:1019..1358 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.264093	0	0	3.65217	1.73159	3.13364	4.5635	1.59751	0.565363	2.4694	0.901825	0.360228	0.935252	0.307562	0.330061	1.82974	1.87542	0	0	4.18951	1.14947	1.24207	0.282305	4.65229	3.89255	13.7399	5.9447	0	0.612507
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045092 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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