TCONS_00045083 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045083
Unique NameTCONS_00045083
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length444

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045083 ID=TCONS_00045083|Name=TCONS_00045083|organism=Clytia hemisphaerica|type=transcript|length=444bp
atattttatgccgTGAGGGTGCGGcaagagtaatatattttatgctgtga
gggtgcagcaagagtaatatattttatacCGTGAGGGTGCGGcaagagta
atatattttatactGTGAGGGTGAAGcaagagtaatatattttatgccgT
GAGGGTACGGcaagagtaatatattttacGCCGTGAGGGTGCGGcaagag
taatatattttatgctgTGAGGGTGCGGCAAGAGTAATATATTTCATGCC
GTGAGGGTGCGGcaagagtaatatattttatgctgTGAGGGTGCAGCAAG
GATTTATGAGTAATGCTGTGAGGTTGCAGTAAGAGATGGCAATGCGAGGG
TGCATTGATGAGTATTTCAGTAGAAAGCTTCTATGTAAATAAAGACTCCT
TTCGGGCACTTACAAAACGAAAACCTTTGTCGAGTATACCGAAC
Run BLAST on NCBI

transcript from alignment at sc0006862:561..1004

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045083 ID=TCONS_00045083|Name=TCONS_00045083|organism=Clytia hemisphaerica|type=transcript|length=444bp|location=Sequence derived from alignment at sc0006862:561..1004 (Clytia hemisphaerica)
GTTCGGTATACTCGACAAAGGTTTTCGTTTTGTAAGTGCCCGAAAGGAGT
CTTTATTTACATAGAAGCTTTCTACTGAAATACTCATCAATGCACCCTCG
CATTGCCATCTCTTACTGCAACCTCACAGCATTACTCATAAATCCTTGCT
GCACCCTCAcagcataaaatatattactcttgCCGCACCCTCACGGCATG
AAATATATTACTCTTGCCGCACCCTCAcagcataaaatatattactcttg
CCGCACCCTCACGGCgtaaaatatattactcttgCCGTACCCTCAcggca
taaaatatattactcttgCTTCACCCTCACagtataaaatatattactct
tgCCGCACCCTCACGgtataaaatatattactcttgctgcaccctcacag
cataaaatatattactcttgCCGCACCCTCAcggcataaaatat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028666XLOC_028666Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045083-exon-sc0006862-1491911889:561..1004TCONS_00045083-exon-sc0006862-1491911889:561..1004Clytia hemisphaericaexon
TCONS_00045083-exon-sc0006862-1510915933:561..1004TCONS_00045083-exon-sc0006862-1510915933:561..1004Clytia hemisphaericaexon
TCONS_00045083-exon-sc0006862-1575043694:561..1004TCONS_00045083-exon-sc0006862-1575043694:561..1004Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0006862supercontigsc0006862:561..1004 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.3028	5.87704	1.72283	1.18372	0.20359	0	0	0	0.382255	0.38932	0.994904	0.119385	0.973192	0.557925	1.68757	0.460259	0.813909	0.144168	0	0	0.145966	0	2.92281	2.76492	0	0.578642	0.414017	0.542876	12.4899	10.9462
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045083 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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