TCONS_00045080 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045080
Unique NameTCONS_00045080
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length207

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045080 ID=TCONS_00045080|Name=TCONS_00045080|organism=Clytia hemisphaerica|type=transcript|length=207bp
TAGGCGTTGAAGTACGAATCTTACATGGACTCGCCTCTTGCAAGATATTT
ACTGAAAAGAGCTCTCAACAATCGACGAATTGGACACTACCTGTTCTGGC
ATCTCAAAGCAGAAGCAGGGAATCCGGACTACTCGTTGCAATTTGGATTG
ATATTGGAGATTTATTGTCGTGGTGCTGTTGACCATATTGATATCTTAAC
CAGACAG
Run BLAST on NCBI

transcript from alignment at sc0006852:454..1361+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045080 ID=TCONS_00045080|Name=TCONS_00045080|organism=Clytia hemisphaerica|type=transcript|length=908bp|location=Sequence derived from alignment at sc0006852:454..1361+ (Clytia hemisphaerica)
TAGGCGTTGAAGTACGAATCTTACATGGACTCGCCTCTTGCAAGATATTT
ACTGAAAAGAGCTCTCAACAATCGACGAATTGGACACTACCTGTTCTGGC
ATCTCAAGTAAGATTTCTTTACACAATTTTTTAATAACTGTAATTTGTAT
TAGTCTAATGCTATTGTTCAAGTAATCTGTCGATAGCCCATAATATCTTG
AACGCGACTGATCTTAAGCGTTCTTGTAAAATCCATTCTACCCCCTCCCT
ACTACTATTTGCCTAAGCTCGGGTAAATTATCAGTTACAGttgattctct
ctaattcgattttcaagagaccaaggattttcttcgaattagagaatgaT
TCGATttacagaaagtattttatactaatttctagctgaggggaccaata
ttttagttcgaattatataaaaattcaaatagaggttcgaattacaaAGA
GTTGACTCCccagggttgcgagctgaccggttggggtgccgcccgacttt
cgacccttggacccttaccgggactaaaaagaagaaaacaaagaaacatt
ttgtgaattttacgacccttattgggacaaatttgaccaaatttccatCT
TTCCGGGggttaaaagttgaaattttcctatttctccgacccttagtggg
cctgaaatttgattttttgatttttccgacccttagtcatagtgggactt
tggaaatccaaaaaggtacccttaagggcggcacataccgtaccctccat
ttgcctaaataCCCCTTCCCCGAGAGTTGACTATAGTAACCTTTGATTGA
CTTTATAGAGCAGAAGCAGGGAATCCGGACTACTCGTTGCAATTTGGATT
GATATTGGAGATTTATTGTCGTGGTGCTGTTGACCATATTGATATCTTAA
CCAGACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028663XLOC_028663Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045080-exon-sc0006852-1491911889:454..560TCONS_00045080-exon-sc0006852-1491911889:454..560Clytia hemisphaericaexon
TCONS_00045080-exon-sc0006852-1510915933:454..560TCONS_00045080-exon-sc0006852-1510915933:454..560Clytia hemisphaericaexon
TCONS_00045080-exon-sc0006852-1575043694:454..560TCONS_00045080-exon-sc0006852-1575043694:454..560Clytia hemisphaericaexon
TCONS_00045080-exon-sc0006852-1491911889:1262..1361TCONS_00045080-exon-sc0006852-1491911889:1262..1361Clytia hemisphaericaexon
TCONS_00045080-exon-sc0006852-1510915933:1262..1361TCONS_00045080-exon-sc0006852-1510915933:1262..1361Clytia hemisphaericaexon
TCONS_00045080-exon-sc0006852-1575043694:1262..1361TCONS_00045080-exon-sc0006852-1575043694:1262..1361Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0006852supercontigsc0006852:454..1361 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	12.5998	10.6831	3.34957	6.6061	5.06689	2.99867	8.13057	1.27407	0	9.33223	2.00864	0	0	0	0	0	0	0	0	0	0
Blast
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BLAST of TCONS_00045080 vs. Swiss-Prot (Human)
Match: PK3CB (Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit beta isoform OS=Homo sapiens GN=PIK3CB PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.263e-23
Identity = 39/67 (58.21%), Postives = 54/67 (80.60%), Query Frame = 1 
Query:    7 LKYESYMDSPLARYLLKRALNNRRIGHYLFWHLKAEAGNPDYSLQFGLILEIYCRGAVDHIDILTRQ 207
            LKYE ++D  L+R+LL+RAL NRRIG +LFWHL++E   P  S+QFG+ILE YCRG+V H+ +L++Q
Sbjct:  646 LKYEPFLDCALSRFLLERALGNRRIGQFLFWHLRSEVHIPAVSVQFGVILEAYCRGSVGHMKVLSKQ 712
The following BLAST results are available for this feature:
BLAST of TCONS_00045080 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PK3CB1.263e-2358.21Phosphatidylinositol 4,5-bisphosphate 3-kinase cat... [more]
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