TCONS_00045052 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045052
Unique NameTCONS_00045052
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length683

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045052 ID=TCONS_00045052|Name=TCONS_00045052|organism=Clytia hemisphaerica|type=transcript|length=683bp
GAAAATTATATCAAATAATATTAAACCTTTCGCTACCTTGGGGAACTATT
TTCGCGATACGAGTTTGTAAAATAAACGCTTTTTGTGGATTTTATTTTCT
CGGTTGACACCAATTTTTTCCCGAATTCTCTCGATTTCTTAAGAGTTCTG
AAGATCTTGTGTGAAAATCGTATTTCGCGGAACTAATGTTCGCAAAAATT
AGCTGCCTTAAGGTAGTTCACGTTAACCCCACTGGCATAAGGAGGCCCTC
CATGTAAACAAATTTGGAAAACGCTTTGGACTCTTCCGGAAGAAATCTGT
TCATGGGATGTAGGATAATTTGTCCAGAGGTTTTCGATACCCCtgcaaaa
aatctttcaaaaaatggcCATGTCTATTTGGTAAATTTAATAAAATGTCC
CTGGACATTTtattaaaatgtttaaaaaatgaaatatttgctGATGATAA
AATTCtcatgaaaactttttaaatgttcTGACGAGCGAAGTGATTGAATT
GCAATAAGTCATCCGTTGGCAGTGGTCGggtaaaaaaatcacaatcttCA
CGATCCCAATAAACAACTTCTCTTTTGACCAAGGACTGATGAAACCTAAG
AggtagaaaatagaaaatcatAATATTTCAAAGCCATGAAATTAggagta
ccttaaaggaagaaattttggcaggaatttaat
Run BLAST on NCBI

transcript from alignment at sc0006788:103..785

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045052 ID=TCONS_00045052|Name=TCONS_00045052|organism=Clytia hemisphaerica|type=transcript|length=683bp|location=Sequence derived from alignment at sc0006788:103..785 (Clytia hemisphaerica)
attaaattcctgccaaaatttcttcctttaaggtactccTAATTTCATGG
CTTTGAAATATTatgattttctattttctaccTCTTAGGTTTCATCAGTC
CTTGGTCAAAAGAGAAGTTGTTTATTGGGATCGTGaagattgtgattttt
ttaccCGACCACTGCCAACGGATGACTTATTGCAATTCAATCACTTCGCT
CGTCAgaacatttaaaaagttttcatgaGAATTTTATCATCagcaaatat
ttcattttttaaacattttaataAAATGTCCAGGGACATTTTATTAAATT
TACCAAATAGACATGgccattttttgaaagattttttgcaGGGGTATCGA
AAACCTCTGGACAAATTATCCTACATCCCATGAACAGATTTCTTCCGGAA
GAGTCCAAAGCGTTTTCCAAATTTGTTTACATGGAGGGCCTCCTTATGCC
AGTGGGGTTAACGTGAACTACCTTAAGGCAGCTAATTTTTGCGAACATTA
GTTCCGCGAAATACGATTTTCACACAAGATCTTCAGAACTCTTAAGAAAT
CGAGAGAATTCGGGAAAAAATTGGTGTCAACCGAGAAAATAAAATCCACA
AAAAGCGTTTATTTTACAAACTCGTATCGCGAAAATAGTTCCCCAAGGTA
GCGAAAGGTTTAATATTATTTGATATAATTTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028636XLOC_028636Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045052-exon-sc0006788-1491911889:103..785TCONS_00045052-exon-sc0006788-1491911889:103..785Clytia hemisphaericaexon
TCONS_00045052-exon-sc0006788-1510915933:103..785TCONS_00045052-exon-sc0006788-1510915933:103..785Clytia hemisphaericaexon
TCONS_00045052-exon-sc0006788-1575043694:103..785TCONS_00045052-exon-sc0006788-1575043694:103..785Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0006788supercontigsc0006788:103..785 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.481557	0	0.082911	1.20286	1.333	0.216117	0.852644	0.204548	0.257173	0.472203	0.357116	0.222271	0.321592	0.188722	0.0501724	0.280976	0.378581	0.083191	0	0.812951	0.471944	0.117485	0.361377	0.0803605	0.146948	0.383744	0.16265	0.228729	0.107686
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045052 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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