|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00045046 ID=TCONS_00045046|Name=TCONS_00045046|organism=Clytia hemisphaerica|type=transcript|length=399bp
GAATGAACAAGATAGATACAAGAAGAAATGCCCAATATGTGGGAAAATCC
CCTCCAATTTGGTCCGACATCTAAAGTCAAAAACGATCCCACTACACAAT
TTAGATCATAAAAGTGCTTTGGATCTATCATTCAAGCAACGAAAGCCGTA
TAACAAAGTCACCACGTCAAACCCAAAGACAAAGAATTACCATTCGAGAA
GATATTGTCTTTTGGCAGGTTGTGGCAGGGAAATGTCAAACCCAAGCGAG
CATCTTTCAGGTTGCCATGACATCAAAGATCCAAAAGAGAGGAAATCTTT
GCTGGAATACATGAGAACACAAGGGAACACTGTTAAAGATACTGGTGCAA
AATCAAATTCAGCAGTCTTTCATCAATCGCAACTGATATCAAATCAACC Run BLAST on NCBI protein sequence of TCONS_00045046-protein >TCONS_00045046-protein ID=TCONS_00045046-protein|Name=TCONS_00045046-protein|organism=Clytia hemisphaerica|type=polypeptide|length=132bp
NEQDRYKKKCPICGKIPSNLVRHLKSKTIPLHNLDHKSALDLSFKQRKPY
NKVTTSNPKTKNYHSRRYCLLAGCGREMSNPSEHLSGCHDIKDPKERKSL
LEYMRTQGNTVKDTGAKSNSAVFHQSQLISNQ Run BLAST on NCBI transcript from alignment at sc0006769:510..1469+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00045046 ID=TCONS_00045046|Name=TCONS_00045046|organism=Clytia hemisphaerica|type=transcript|length=960bp|location=Sequence derived from alignment at sc0006769:510..1469+ (Clytia hemisphaerica)
GAATGAACAAGATAGATACAAGAAGAAATGCCCAATATGTGGGAAAATCC
CCTCCAATTTGGTCCGACATCTAAAGTCAAAAACGATCCCACTACACAAT
TTAGATCATAAAAGTGCTTTGGATCTATCATTCAAGCAACGAAAGCCGTA
TAACAAAGTCACCACGTCAAACCCAAAGACAAAGAATTACCATTCGAGAA
GATATTGTCTTTTGGCAGGTTGTGGCAGGGAAATGTCAAACCCAAGCGAG
CATCTTTCAGGTTGCCATGACATCAAAGATCCAAAAGAGAGGAAATCTTT
GCTGGAATACATGAGAACACAAGGTGAGTTCAAAACTTGACATCATTCCT
TATTAGTATTCTTTAAATAACTCACCCTTTTCTAAGACATCTGAACATTT
AATTTAAAGAgcattttgtttaaaatagCATATGTATATTTATTTCTTAG
GGAACACTGTTAAAGATACTGGTGCAAAATCAAATTCAGGTATAGTttat
ttgtgtgttttttggtGTGTGGCCAAAAGGTTTCAGATTAGCCTAAGGAC
TTTAAAGTTGAGGAAATATTACTTTTCCCCGTCATTGATTTTCAACAAAC
AAATCTGCCACCTTTTAAGAATTGAAGTCACAAATTCACGTTACTCTGGG
AGAGGCCACTAAGAACGTAACAAATACTGAAacaaatctatcttaccagt
aTATTATGGAATTACCTTGTTTCGTTTGATCATTTAATTGTGCTGGTAAA
AAACTGTAGCAATTCTATCATATCAGTATAGTATGGAATTACGATGCATC
GTTGTTCTAATATAGATAATGTATCAATTCTATCCTACTCTATCCTAATT
CTATCCTACTAGTACAATATACGTTGTGTCGTTTGATCTTTGTGTTTATG
AGATATTGTACTTTCATTTACAGCAGTCTTTCATCAATCGCAACTGATAT
CAAATCAACC Coding sequence (CDS) from alignment at sc0006769:510..1469+ >TCONS_00045046 ID=TCONS_00045046|Name=TCONS_00045046|organism=Clytia hemisphaerica|type=CDS|length=1188bp|location=Sequence derived from alignment at sc0006769:510..1469+ (Clytia hemisphaerica)
AATGAACAAGATAGATACAAGAAGAAATGCCCAATATGTGGGAAAATCCC
CTCCAATTTGGTCCGACATCTAAAGTCAAAAACGATCCCACTACACAATT
TAGATCATAAAAGTGCTTTGGATCTATCATTCAAGCAACGAAAGCCGTAT
AACAAAGTCACCACGTCAAACCCAAAGACAAAGAATTACCATTCGAGAAG
ATATTGTCTTTTGGCAGGTTGTGGCAGGGAAATGTCAAACCCAAGCGAGC
ATCTTTCAGGTTGCCATGACATCAAAGATCCAAAAGAGAGGAAATCTTTG
CTGGAATACATGAGAACACAAGGGAACACTGTTAAAGATACTGGTGCAAA
ATCAAATTCAGCAGTCTTTCATCAATCGCAACTGATATCAAATCAAAATG
AACAAGATAGATACAAGAAGAAATGCCCAATATGTGGGAAAATCCCCTCC
AATTTGGTCCGACATCTAAAGTCAAAAACGATCCCACTACACAATTTAGA
TCATAAAAGTGCTTTGGATCTATCATTCAAGCAACGAAAGCCGTATAACA
AAGTCACCACGTCAAACCCAAAGACAAAGAATTACCATTCGAGAAGATAT
TGTCTTTTGGCAGGTTGTGGCAGGGAAATGTCAAACCCAAGCGAGCATCT
TTCAGGTTGCCATGACATCAAAGATCCAAAAGAGAGGAAATCTTTGCTGG
AATACATGAGAACACAAGGGAACACTGTTAAAGATACTGGTGCAAAATCA
AATTCAGCAGTCTTTCATCAATCGCAACTGATATCAAATCAAAATGAACA
AGATAGATACAAGAAGAAATGCCCAATATGTGGGAAAATCCCCTCCAATT
TGGTCCGACATCTAAAGTCAAAAACGATCCCACTACACAATTTAGATCAT
AAAAGTGCTTTGGATCTATCATTCAAGCAACGAAAGCCGTATAACAAAGT
CACCACGTCAAACCCAAAGACAAAGAATTACCATTCGAGAAGATATTGTC
TTTTGGCAGGTTGTGGCAGGGAAATGTCAAACCCAAGCGAGCATCTTTCA
GGTTGCCATGACATCAAAGATCCAAAAGAGAGGAAATCTTTGCTGGAATA
CATGAGAACACAAGGGAACACTGTTAAAGATACTGGTGCAAAATCAAATT
CAGCAGTCTTTCATCAATCGCAACTGATATCAAATCAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00045046-exon-sc0006769-1491911889:510..832 | TCONS_00045046-exon-sc0006769-1491911889:510..832 | Clytia hemisphaerica | exon |
| TCONS_00045046-exon-sc0006769-1510915933:510..832 | TCONS_00045046-exon-sc0006769-1510915933:510..832 | Clytia hemisphaerica | exon |
| TCONS_00045046-exon-sc0006769-1575043694:510..832 | TCONS_00045046-exon-sc0006769-1575043694:510..832 | Clytia hemisphaerica | exon |
| TCONS_00045046-exon-sc0006769-1491911889:960..998 | TCONS_00045046-exon-sc0006769-1491911889:960..998 | Clytia hemisphaerica | exon |
| TCONS_00045046-exon-sc0006769-1510915933:960..998 | TCONS_00045046-exon-sc0006769-1510915933:960..998 | Clytia hemisphaerica | exon |
| TCONS_00045046-exon-sc0006769-1575043694:960..998 | TCONS_00045046-exon-sc0006769-1575043694:960..998 | Clytia hemisphaerica | exon |
| TCONS_00045046-exon-sc0006769-1491911889:1433..1469 | TCONS_00045046-exon-sc0006769-1491911889:1433..1469 | Clytia hemisphaerica | exon |
| TCONS_00045046-exon-sc0006769-1510915933:1433..1469 | TCONS_00045046-exon-sc0006769-1510915933:1433..1469 | Clytia hemisphaerica | exon |
| TCONS_00045046-exon-sc0006769-1575043694:1433..1469 | TCONS_00045046-exon-sc0006769-1575043694:1433..1469 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0006769 | supercontig | sc0006769:510..1469 + |
Blast
The following BLAST results are available for this feature:
|
