TCONS_00045028 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045028
Unique NameTCONS_00045028
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length456

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045028 ID=TCONS_00045028|Name=TCONS_00045028|organism=Clytia hemisphaerica|type=transcript|length=456bp
cagcatttctatAGTAAATCAACTGTCACACTCAACCACCAACCGACCAT
TGttaatacaaaaataacaattcttATCGCGATTTCCATGATTCCACTGT
GACTTCTTCGACGTACGTATCCAGACTTAACCTCAATCTTCGAAATATCT
GGTGATTTGTtcctgttggaaaaaaaaaaacgttttggtatgtaaacttt
gtatggtttgattactcgaaatgtgacatttatgtaaacgaaacactgaa
aactaatttttattattttggaagccggaaatccaccggatgtgaaaaaa
agccaaatttgcaCAATACTTTTAAATTTGTAAATTGCTAGCTATTTTCT
ATGAACTATGTACCAACAAATTTTTGGAATACGAATActtggaaatataa
tttttagattcatGAAATCCAAACTCAAGTTACCCGTTTTTGCCCCTGTA
CCAACC
Run BLAST on NCBI

transcript from alignment at sc0006717:1013..1468

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045028 ID=TCONS_00045028|Name=TCONS_00045028|organism=Clytia hemisphaerica|type=transcript|length=456bp|location=Sequence derived from alignment at sc0006717:1013..1468 (Clytia hemisphaerica)
GGTTGGTACAGGGGCAAAAACGGGTAACTTGAGTTTGGATTTCatgaatc
taaaaattatatttccaagTATTCGTATTCCAAAAATTTGTTGGTACATA
GTTCATAGAAAATAGCTAGCAATTTACAAATTTAAAAGTATTGtgcaaat
ttggctttttttcacatccggtggatttccggcttccaaaataataaaaa
ttagttttcagtgtttcgtttacataaatgtcacatttcgagtaatcaaa
ccatacaaagtttacataccaaaacgtttttttttttccaacaggaACAA
ATCACCAGATATTTCGAAGATTGAGGTTAAGTCTGGATACGTACGTCGAA
GAAGTCACAGTGGAATCATGGAAATCGCGATaagaattgttatttttgta
ttaaCAATGGTCGGTTGGTGGTTGAGTGTGACAGTTGATTTACTatagaa
atgctg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028613XLOC_028613Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045028-exon-sc0006717-1491911889:1013..1468TCONS_00045028-exon-sc0006717-1491911889:1013..1468Clytia hemisphaericaexon
TCONS_00045028-exon-sc0006717-1510915933:1013..1468TCONS_00045028-exon-sc0006717-1510915933:1013..1468Clytia hemisphaericaexon
TCONS_00045028-exon-sc0006717-1575043694:1013..1468TCONS_00045028-exon-sc0006717-1575043694:1013..1468Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0006717supercontigsc0006717:1013..1468 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.76701	5.84589	2.95534	2.35867	100.562	62.203	60.1804	72.3812	16.5728	17.4105	15.5258	18.9088	18.2453	22.6363	15.2224	20.3649	17.4071	20.9425	32.424	27.1785	25.2434	27.1104	39.8822	30.2193	27.1088	38.3022	46.1089	38.8194	29.3768	25.3035
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045028 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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