TCONS_00045025 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045025
Unique NameTCONS_00045025
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length238

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045025 ID=TCONS_00045025|Name=TCONS_00045025|organism=Clytia hemisphaerica|type=transcript|length=238bp
caatagaaatcgAACCAATTAGATTGAAGATCAAGGATGTGGGCATCAct
tttctttgttctttacGTTCTGCCATTGGTCTTTTGTTACCATGGCAACT
TACAAGACCAATTAAATGATGACTTTGCAGAAAATACGGATAACGACGAA
AGAGAATTCCAAGATGCTTtCTCAAACGATGGTCGAATGAGAAGAAAACA
TTCATTTCACAAAGACTGGAAAGAAGGAAGAATGAGTA
Run BLAST on NCBI

transcript from alignment at sc0006709:601..1524+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045025 ID=TCONS_00045025|Name=TCONS_00045025|organism=Clytia hemisphaerica|type=transcript|length=924bp|location=Sequence derived from alignment at sc0006709:601..1524+ (Clytia hemisphaerica)
caatagaaatcgAACCAATTAGATTGAAGATCAAGGATGTGGGCATCAct
tttctttgttctttacGTTCTGCCATTGGTCTTTTGTTACCATGGCAACT
TACAAGACCAATTAAATGATGACTTTGCAGAAAATACGGATAACGACGAA
AGAGAATTCCAAGATGCTTGTAAGTGTGATTTCTTTAACAAGAGCTGCAA
AGAGGTGAATAAAGACTTCTCTTGNATACGGATAACGACGAAAGAGAATT
CCAAGATGCTTGTAAGTGTGATTTCTTTAACAAGAGCTGCAAAGAGGTGA
ATAAAGACTTCTCTTGCGATTTGTGGTTTATTACTTCAAATTCTAAAATC
CAtgccatggcttggcagctcaCGTCTGTCAAGTCNTCTCTTGTGATTTG
TGGTTTATTACTTCAAATTCTAAAATCCAtgccatggcttggcagctcac
gtctgtcaagtcgcagtgtctgtcagcgccgcgattcctactccttcgtg
ggtaggacccattccgaatGCATTCGCAGGGCTCGTATCTATCTATTCTA
AAATCCACCAATGGCATAATAGTTTAGAGGTCCATGAAGACAAAAAGTAT
AGAGGtaataaatttaatatttggCTTTGCTTACAAATCAACCTTAAGAT
TAGAGACTTTTAAGGAAAGTAGAAAGTTTATAACCTCATTTAAGAAAAAG
TATAACATAATGCCATAAATGACACGTATATATACAACAACTTTTATCAT
TTTCGCGGTTTTGGGTCCGTGAAAATTATTTCCTACAAATATCAATTTAG
TAAAAAACATCGGTGgcgaaaattaatttctttaaggcataattttttat
catagtCTCAAACGATGGTCGAATGAGAAGAAAACATTCATTTCACAAAG
ACTGGAAAGAAGGAAGAATGAGTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028610XLOC_028610Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045025-exon-sc0006709-1491911889:601..769TCONS_00045025-exon-sc0006709-1491911889:601..769Clytia hemisphaericaexon
TCONS_00045025-exon-sc0006709-1510915933:601..769TCONS_00045025-exon-sc0006709-1510915933:601..769Clytia hemisphaericaexon
TCONS_00045025-exon-sc0006709-1575043694:601..769TCONS_00045025-exon-sc0006709-1575043694:601..769Clytia hemisphaericaexon
TCONS_00045025-exon-sc0006709-1491911889:1456..1524TCONS_00045025-exon-sc0006709-1491911889:1456..1524Clytia hemisphaericaexon
TCONS_00045025-exon-sc0006709-1510915933:1456..1524TCONS_00045025-exon-sc0006709-1510915933:1456..1524Clytia hemisphaericaexon
TCONS_00045025-exon-sc0006709-1575043694:1456..1524TCONS_00045025-exon-sc0006709-1575043694:1456..1524Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0006709supercontigsc0006709:601..1524 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	1.25263	0.989849	0	0	0.782742	0	0	0.618623	1.23553	0	0	0	32.0758	61.4651	0	0	240.687	216.837	69.2266	133.62	24.9322	53.4033	0	1.35929	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045025 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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