TCONS_00045019 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045019
Unique NameTCONS_00045019
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length277

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045019 ID=TCONS_00045019|Name=TCONS_00045019|organism=Clytia hemisphaerica|type=transcript|length=277bp
AATACGATGGCCCCGAGGTTTCTTCACTTCtaaaaaaagttctgaaagtt
tcaagaagagaagtaaaaatttaaagaagggAAGTAAATATTTCGAGaag
ggaagtaaaaattttaaaaagggaAGTAAAATGTCTTTAAGTATCGAAAT
TGTCATTAAATTTCTACATTGGCGAGCTGTCAAAATGGTTTTAacccttt
ttaaattgtttaaagCACAAGACAACGTCTAAAACACGTGATCCTACAAC
AAAGATTATATAAATATAAGTACTCTC
Run BLAST on NCBI

transcript from alignment at sc0006684:1013..1289

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045019 ID=TCONS_00045019|Name=TCONS_00045019|organism=Clytia hemisphaerica|type=transcript|length=277bp|location=Sequence derived from alignment at sc0006684:1013..1289 (Clytia hemisphaerica)
GAGAGTACTTATATTTATATAATCTTTGTTGTAGGATCACGTGTTTTAGA
CGTTGTCTTGTGctttaaacaatttaaaaagggtTAAAACCATTTTGACA
GCTCGCCAATGTAGAAATTTAATGACAATTTCGATACTTAAAGACATTTT
ACTtccctttttaaaatttttacttcccttCTCGAAATATTTACTTccct
tctttaaatttttacttctcttcttgaaactttcagaactttttttaGAA
GTGAAGAAACCTCGGGGCCATCGTATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028604XLOC_028604Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045019-exon-sc0006684-1491911889:1013..1289TCONS_00045019-exon-sc0006684-1491911889:1013..1289Clytia hemisphaericaexon
TCONS_00045019-exon-sc0006684-1510915933:1013..1289TCONS_00045019-exon-sc0006684-1510915933:1013..1289Clytia hemisphaericaexon
TCONS_00045019-exon-sc0006684-1575043694:1013..1289TCONS_00045019-exon-sc0006684-1575043694:1013..1289Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0006684supercontigsc0006684:1013..1289 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.547513	1.09446	0	1.82265	0	0	0.661394	0.854715	1.07697	0	0	0.342614	1.49769	0	0.584232	0	0.386188	0.791661	1.09372	0	3.907	1.53462	3.86057	0.561624	0	0.492943	0	0.885878	0.570988	3.05241
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045019 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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