|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00045018 ID=TCONS_00045018|Name=TCONS_00045018|organism=Clytia hemisphaerica|type=transcript|length=615bp
CGTTTGGACttgattttataatttatcaatcacgttttcaaaatgttctt
atttttcgttGCGCTGTCGTTTCCTACCATCAAGAGGAAACGAACTCCCC
GGCAGTTATTATTCACCGAAGAGATAACCCATCGATCGTGGATCGCGGCC
GTCATCATTTTGGCTAGTGCTTCCTTGGGATGGGTTGCCACCTCGGAAAT
CCTATAATAAGGAAGACAACATCGAACGGAATAAACTGAAGAACAACCCC
GTAAGTCCGTCCGAGCGTTGGGCTCAGATTAAAGCTGAGCAAGAAGAGCC
TGATTGGGATGACGAATTGAATTGTTCGGAATTGTCGGATTCAGCCGAAG
TGATTGAGTAGCTCGATTCACTCGTCCTGTCGCCAGAAGTAATTGAAAGC
TGAGCGTGGACAATCGCAGCACCATCTTGTCAACCATCAGAATGTTGAAC
CGTGAAATATaatgattttttgtttcttttatacACCTCACAAAAATTTC
GTTTGTTATTTCCTTTCCTCCACAGCTTCCTTTGTTTCGTCACAATACAT
ATAGTACAAACTTTTGCGGTACTTCGGTTACCATGATTGCAACTCTTTTA
AAATTAATGAGTCTT Run BLAST on NCBI transcript from alignment at sc0006680:1..1567- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00045018 ID=TCONS_00045018|Name=TCONS_00045018|organism=Clytia hemisphaerica|type=transcript|length=1567bp|location=Sequence derived from alignment at sc0006680:1..1567- (Clytia hemisphaerica)
CGTTTGGACTTGATTTTATAATTTATCAATCACGTTTTCAAAATGTTCTT
ATTTTTCGTTGCGCTGTCGTTTCCTACCATCAAGAGGAAACGAACTCCCC
GGCAGTTATTATTCACCGAAGAGATAACCCATCGATCGTGGATCGCGGCC
GTCATCATTTTGGCTAGTGCTTCCTTGGGATGGGTTGCCACCTCGGAAAT
CCTATAATAAGGAAGACAACATCGAACGTAAGTGGAAAAATTCTATATTA
ATTTACAATCAAATATTAANNNNNNNNNNNNNNNNNNATCATTTTGGCCA
GTGCTTCCTTGGGATGGGTTGCCACCTCGGAAATCCTATAATAAGGAAGA
CAACATCGAACGTAAGTGGAAAAATTCTATATTAATTTACAATCAAATAT
TAAATATTAAAACGTCCTAAAGTTCTCTGATACCAGATCATTGAACCAAA
TAAATAAAATACTACAAAAAAAAATTTTAATCGACAAATTCTAATCAAAT
TTTATATACAAATCTTCATTTTATGATTCACTAATAACATTCTTGTTACA
GTTCCTGATGGTTTTTCTTCATTACTTTTCAGGGAATAAACTGAAGAACA
ACCCCGTAAGTCCGTCCGAGCGTTGGGCTCAGATTAAAGCTGAGCAAGAA
GAGCCTGATTGGGATGACGAATTGAATTGTTCGGAATTGTCGGATTCAGC
CGAAGTGATTGAGTAGCTCGGTAAGTTTTCATTTGTTTGCAATACTTCCG
GCCATTGCTCATGTACGGGAGCTCCTCGTTGCAGTGGTTGAGGCGGTTTC
TCATATCTCCACACCGTAAACGCTCCGAATTTTTCTTTCCTCAATCCCAT
TCGACGAAGATAATCAGCTCTGTATTCTTCTGTTGTCAAACGTATTAAGA
TATCTAGTCGGCGGTCTTCTTCCCTGATATTGCTTGCTTCTTTGGGTGAT
CTTCTTTTAAGTCTTGTCAAGATTATCTCACTGTGCATCCTTCCAAAATA
CGAAAGAATAAGTTGGGGTTTTGTGTTTATTATATCCCTTTGCAGTTCGA
TACAGGGTGCTATCNNNNNTTCTTTTAAGTCTTGTCAAGATTATCTCACT
GTGCATCCTTCCAAAATACGAAAGAATAAGTTGGGGTTTTGTGTTTATTA
TATCCCTTTGCAGTTCGATACAGGGTGCTATCTTCAGCTGTATAAATTGA
AAGCGAATTCTTGTGATTGTGTCTTGATTGATCGCTCACCATGAGGACGA
CTCGTATTTTCTTTAACAGCATGGCCTGTTGCTTCTGTGACATAATTTTA
TCCATCTTGATTTCTAGATTCACTCGTCCTGTCGCCAGAAGTAATTGAAA
GCTGAGCGTGGACAATCGCAGCACCATCTTGTCAACCATCAGAATGTTGA
ACCGTGAAATATAATGATTTTTTGTTTCTTTTATACACCTCACAAAAATT
TCGTTTGTTATTTCCTTTCCTCCACAGCTTCCTTTGTTTCGTCACAATAC
ATATAGTACAAACTTTTGCGGTACTTCGGTTACCATGATTGCAACTCTTT
TAAAATTAATGAGTCTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00045018-exon-sc0006680-1575043694:1341..1567 | TCONS_00045018-exon-sc0006680-1575043694:1341..1567 | Clytia hemisphaerica | exon |
| TCONS_00045018-exon-sc0006680-1575043694:848..985 | TCONS_00045018-exon-sc0006680-1575043694:848..985 | Clytia hemisphaerica | exon |
| TCONS_00045018-exon-sc0006680-1575043694:1..250 | TCONS_00045018-exon-sc0006680-1575043694:1..250 | Clytia hemisphaerica | exon |
| TCONS_00045018-exon-sc0006680-1510915933:1341..1567 | TCONS_00045018-exon-sc0006680-1510915933:1341..1567 | Clytia hemisphaerica | exon |
| TCONS_00045018-exon-sc0006680-1510915933:848..985 | TCONS_00045018-exon-sc0006680-1510915933:848..985 | Clytia hemisphaerica | exon |
| TCONS_00045018-exon-sc0006680-1510915933:1..250 | TCONS_00045018-exon-sc0006680-1510915933:1..250 | Clytia hemisphaerica | exon |
| TCONS_00045018-exon-sc0006680-1491911889:1341..1567 | TCONS_00045018-exon-sc0006680-1491911889:1341..1567 | Clytia hemisphaerica | exon |
| TCONS_00045018-exon-sc0006680-1491911889:848..985 | TCONS_00045018-exon-sc0006680-1491911889:848..985 | Clytia hemisphaerica | exon |
| TCONS_00045018-exon-sc0006680-1491911889:1..250 | TCONS_00045018-exon-sc0006680-1491911889:1..250 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0006680 | supercontig | sc0006680:1..1567 - |
Blast
The following BLAST results are available for this feature:
|
