TCONS_00045011 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045011
Unique NameTCONS_00045011
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length339

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045011 ID=TCONS_00045011|Name=TCONS_00045011|organism=Clytia hemisphaerica|type=transcript|length=339bp
TAGAAAAGCAGTTAATATTAAGAAAAAAGCAAGATATGATATTCTGAATT
ACCAGCGACTTATTTCAGGAAATATCAAGCATAAACGTCAGTTGTTTCAA
ATTACAATGGCATTCAGTAAGAGTCAAGAACAAAGAAGGCAAAGTAATAC
AAGCTCTCTTAGTGCTCTTGAGGATGATCCACTGCTCAGAGATTGTATTG
GTTTGAGACAAAGGTTGTTGGATACTGAGAAATCACTTCAAAATCTCACC
ATATCGACAGCAACACCAAAGATTTCTCCAAATGATAGTTTGAGAGCTGC
AAGAAATGAAACTGATAAAAGCATTTTATCGGACCATGC
Run BLAST on NCBI

transcript from alignment at sc0006674:390..964-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045011 ID=TCONS_00045011|Name=TCONS_00045011|organism=Clytia hemisphaerica|type=transcript|length=575bp|location=Sequence derived from alignment at sc0006674:390..964- (Clytia hemisphaerica)
TAGAAAAGCAGTTAATATTAAGAAAAAAGCAAGATATGATATTCTGAATT
ACCAGCGACTTATTTCAGGAAATATCAAGCATAAACGTCAGTTGTTTCAA
ATTACAATGGCATTCAGTAAGAGTCAAGAACAAAGAAGGCAAAGTAATAC
AAGCTCTCTTAGTGCTCTTGAGGATGATCCACTGCTCAGAGATTGTATTG
GTTTGAGACAAAGGTTGTTGGATACTGAGAAATCACTTCAAAATCTCACC
ATATCGACAGCAACACCAAAGATTTCTCCAAATGATAGTTTGAGGTATAA
CTTTTTCATTTGTGAATTTGTTTTGTACCTTATAAGAATGTATTATTATG
ATAATGAAGATGTGTCTGTGTGTTTAAGACTTTTTCAACATAATTGTTAG
ATCCATTTGTCTTAATAAATCTTACCCTCTTTGCATGATTTCGCAAAAAA
AGATTTTTATTGCTATTGACTTTGTCTTTTTGCAATTGCAAATTTACAGA
ATTTTTTTCCCATCTTATTATGCTTTGTAGAGCTGCAAGAAATGAAACTG
ATAAAAGCATTTTATCGGACCATGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028601XLOC_028601Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045011-exon-sc0006674-1575043694:671..964TCONS_00045011-exon-sc0006674-1575043694:671..964Clytia hemisphaericaexon
TCONS_00045011-exon-sc0006674-1575043694:390..434TCONS_00045011-exon-sc0006674-1575043694:390..434Clytia hemisphaericaexon
TCONS_00045011-exon-sc0006674-1510915933:671..964TCONS_00045011-exon-sc0006674-1510915933:671..964Clytia hemisphaericaexon
TCONS_00045011-exon-sc0006674-1510915933:390..434TCONS_00045011-exon-sc0006674-1510915933:390..434Clytia hemisphaericaexon
TCONS_00045011-exon-sc0006674-1491911889:671..964TCONS_00045011-exon-sc0006674-1491911889:671..964Clytia hemisphaericaexon
TCONS_00045011-exon-sc0006674-1491911889:390..434TCONS_00045011-exon-sc0006674-1491911889:390..434Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0006674supercontigsc0006674:390..964 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0034597	0.617459	0	0	0	0	0	1.67503	0.753176	1.1145	1.59076	0.195448	0.597739	2.44717	0.454936	0.927481	0	0.876297	0.290102	1.00089	0.330371	0	0	0.41209	0	0	0	0.562312	0.302902	0.308609
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045011 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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