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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00045009 ID=TCONS_00045009|Name=TCONS_00045009|organism=Clytia hemisphaerica|type=transcript|length=1261bp
CACATTATTGATACAAGCAACAGTGTCAATTTGATACAAACTTGATCCAG
ACTCTTGGCGTGGTCCAAACCTTGCAGTTTCTTCACCTCCGCCAAAGCCA
CAACTGACTTCAATATTATTCCAACCCATTATTAATCAATATCTTTTGAt
tcttgttattttcttttaatCTAAAGATAAGGTAAAAACATATACCACAT
AAAATTaactttaagaaaattattctttaaaTATCAGTGATGATCTATAT
TATTTTAAAAGTATCATGATTCAACATATTGACATTAAAAATGATTTACA
AAGGAATTGAACTACAATAATCaactagaaataatcatttCTCCAAATTT
TGTTCAATATGTTTTTCATCAGTTTCTACAAATTCCTGGACgagtctttt
aaattttttactgGCANTAGAAATAATCATTTCTCCAAATTTTGTTCAAT
ATGTTTTTCATCAGTTTCTACAAATTCCTGGACgagtcttttaaattttt
tactgGCAGAGTACATTGAATCTTTTGTTCTGTTTGCAGGGAAAACTTGT
AGATTCCGTCCTCTGAGCTgtaattttgttacttttaatTTCAACACCTT
CTCTGCTTGTAAAGGATTTGCAAACACCACATAACCAtgtccttttgatt
ttttacttctCCTATCTCTTGGAATTGTGACTCGCAATACTTTACCAAAT
GTTTCTAAGTAATCCCAAAGTTCAGatggttttgttttaaatggtAGGTT
CTTAACAATGACTGTAGTTGGTGAGAATTTTACATCACTTTCTTCAACAA
AAGAGCTGGCAGCTTTTCGAAGATTCAATGTTCCCATGACAAATTCAATA
TATAACTTTGGATCCTTCTGTTTTCCTAGGATGTTTACTTCTGATATTTT
AGGTTTGATTTTGTCCATGAATATTGCTTGCCTCCGATGATCAAATTCTT
TCCAAAAATCTGTTTTCAGAATAATCAACAAACCTTCAAGTTGGCCCATA
ACATGAAGTTTGTGAATTACTTTGTAATAACTTTTTTCAAGCATTGTTTC
CTGGAAGGAATTAAGATTTATCACTTTATAGTCCCATAATCATTTAGACA
AATAATATTGtatgatgttttaaaaatgtaaatCTTTTGTATAAACAAGG
AAAAGGGGTCCCATCCCCTAAATTGCAACCATGATACCAACACAGTTCCA
ACAGTTCTGATTAATGTGAAAAAGGAGCCACCCCCAACTAAATTGGTtct
gattgattttc Run BLAST on NCBI protein sequence of TCONS_00045009-protein >TCONS_00045009-protein ID=TCONS_00045009-protein|Name=TCONS_00045009-protein|organism=Clytia hemisphaerica|type=polypeptide|length=205bp
MLEKSYYKVIHKLHVMGQLEGLLIILKTDFWKEFDHRRQAIFMDKIKPKI
SEVNILGKQKDPKLYIEFVMGTLNLRKAASSFVEESDVKFSPTTVIVKNL
PFKTKPSELWDYLETFGKVLRVTIPRDRRSKKSKGHGYVVFANPLQAEKV
LKLKVTKLQLRGRNLQVFPANRTKDSMYSASKKFKRLVQEFVETDEKHIE
QNLEK Run BLAST on NCBI transcript from alignment at sc0006672:49..1309 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00045009 ID=TCONS_00045009|Name=TCONS_00045009|organism=Clytia hemisphaerica|type=transcript|length=1261bp|location=Sequence derived from alignment at sc0006672:49..1309 (Clytia hemisphaerica)
gaaaatcaatcagaACCAATTTAGTTGGGGGTGGCTCCTTTTTCACATTA
ATCAGAACTGTTGGAACTGTGTTGGTATCATGGTTGCAATTTAGGGGATG
GGACCCCTTTTCCTTGTTTATACAAAAGatttacatttttaaaacatcat
aCAATATTATTTGTCTAAATGATTATGGGACTATAAAGTGATAAATCTTA
ATTCCTTCCAGGAAACAATGCTTGAAAAAAGTTATTACAAAGTAATTCAC
AAACTTCATGTTATGGGCCAACTTGAAGGTTTGTTGATTATTCTGAAAAC
AGATTTTTGGAAAGAATTTGATCATCGGAGGCAAGCAATATTCATGGACA
AAATCAAACCTAAAATATCAGAAGTAAACATCCTAGGAAAACAGAAGGAT
CCAAAGTTATATATTGAATTTGTCATGGGAACATTGAATCTTCGAAAAGC
TGCCAGCTCTTTTGTTGAAGAAAGTGATGTAAAATTCTCACCAACTACAG
TCATTGTTAAGAACCTaccatttaaaacaaaaccatCTGAACTTTGGGAT
TACTTAGAAACATTTGGTAAAGTATTGCGAGTCACAATTCCAAGAGATAG
GagaagtaaaaaatcaaaaggacaTGGTTATGTGGTGTTTGCAAATCCTT
TACAAGCAGAGAAGGTGTTGAAattaaaagtaacaaaattacAGCTCAGA
GGACGGAATCTACAAGTTTTCCCTGCAAACAGAACAAAAGATTCAATGTA
CTCTGCcagtaaaaaatttaaaagactcGTCCAGGAATTTGTAGAAACTG
ATGAAAAACATATTGAACAAAATTTGGAGAAATGATTATTTCTANTGCca
gtaaaaaatttaaaagactcGTCCAGGAATTTGTAGAAACTGATGAAAAA
CATATTGAACAAAATTTGGAGaaatgattatttctagttGATTATTGTAG
TTCAATTCCTTTGTAAATCATTTTTAATGTCAATATGTTGAATCATGATA
CTTTTAAAATAATATAGATCATCACTGATAtttaaagaataattttctta
aagttAATTTTATGTGGTATATGTTTTTACCTTATCTTTAGattaaaaga
aaataacaagaaTCAAAAGATATTGATTAATAATGGGTTGGAATAATATT
GAAGTCAGTTGTGGCTTTGGCGGAGGTGAAGAAACTGCAAGGTTTGGACC
ACGCCAAGAGTCTGGATCAAGTTTGTATCAAATTGACACTGTTGCTTGTA
TCAATAATGTG Coding sequence (CDS) from alignment at sc0006672:49..1309 >TCONS_00045009 ID=TCONS_00045009|Name=TCONS_00045009|organism=Clytia hemisphaerica|type=CDS|length=618bp|location=Sequence derived from alignment at sc0006672:49..1309 (Clytia hemisphaerica)
ATGCTTGAAAAAAGTTATTACAAAGTAATTCACAAACTTCATGTTATGGG
CCAACTTGAAGGTTTGTTGATTATTCTGAAAACAGATTTTTGGAAAGAAT
TTGATCATCGGAGGCAAGCAATATTCATGGACAAAATCAAACCTAAAATA
TCAGAAGTAAACATCCTAGGAAAACAGAAGGATCCAAAGTTATATATTGA
ATTTGTCATGGGAACATTGAATCTTCGAAAAGCTGCCAGCTCTTTTGTTG
AAGAAAGTGATGTAAAATTCTCACCAACTACAGTCATTGTTAAGAACCTa
ccatttaaaacaaaaccatCTGAACTTTGGGATTACTTAGAAACATTTGG
TAAAGTATTGCGAGTCACAATTCCAAGAGATAGGagaagtaaaaaatcaa
aaggacaTGGTTATGTGGTGTTTGCAAATCCTTTACAAGCAGAGAAGGTG
TTGAAattaaaagtaacaaaattacAGCTCAGAGGACGGAATCTACAAGT
TTTCCCTGCAAACAGAACAAAAGATTCAATGTACTCTGCcagtaaaaaat
ttaaaagactcGTCCAGGAATTTGTAGAAACTGATGAAAAACATATTGAA
CAAAATTTGGAGAAATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00045009-exon-sc0006672-1491911889:49..1309 | TCONS_00045009-exon-sc0006672-1491911889:49..1309 | Clytia hemisphaerica | exon |
| TCONS_00045009-exon-sc0006672-1510915933:49..1309 | TCONS_00045009-exon-sc0006672-1510915933:49..1309 | Clytia hemisphaerica | exon |
| TCONS_00045009-exon-sc0006672-1575043694:49..1309 | TCONS_00045009-exon-sc0006672-1575043694:49..1309 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0006672 | supercontig | sc0006672:49..1309 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000504 | RRM_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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