TCONS_00045002 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045002
Unique NameTCONS_00045002
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length276

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045002 ID=TCONS_00045002|Name=TCONS_00045002|organism=Clytia hemisphaerica|type=transcript|length=276bp
CGTGTTATGAAGCCCATATGGAAAGATTCGTTTCTGGTTGAAAGAGGAAA
ATTGAAACCGGTCGGCTTGAACGAAACTAAATCTCAAGAAGTTGATACCT
TAATGTTTCCCTCACTGCGTAAAATTCAGAAATTATGTTTGAAATATGGA
TATCCTAAACCCCCATGCACACCTGAGAAGAAAATTGTTTGCTACTCAAG
CGGCAATCAGATCTATGTTCAGAAATGCTCTGTGGAAGTGAGTGAAACCG
AACGATGTTCCTGCACAAGAGATGGT
Run BLAST on NCBI

transcript from alignment at sc0006649:573..1583-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045002 ID=TCONS_00045002|Name=TCONS_00045002|organism=Clytia hemisphaerica|type=transcript|length=1011bp|location=Sequence derived from alignment at sc0006649:573..1583- (Clytia hemisphaerica)
CGTGTTATGAAGCCCATATGGAAAGATTCGTTTCTGGTTGAAAGAGGGTA
ATAATTTTTTGTATGTTTATCGTGTGTGCAAATAATTTAGTTTTTGAATA
TAATCTTCAATGCCTGCATTTCAAATCAAAAAGGGTTTTTAGGTTTCGAG
GGCTGTGATCTGAAAAAAAGGAATTATGAATTTTACGAGCCTAATTGGGA
CAAATTTGTCAAACTTCGATTTTCTAAGGGGAAAAAGTTGTAAATTTCCT
AATTTCCCGACCGTGAGCGGAACTGATATTTAATTTTCTGGTTTTTCGTT
CTCTTCACTCTCAAACTCGATCAAACTCGTAGTGAGCCCCTTAGCTCGAC
TAATTATCGATCTTGGCACCAGATTTTATAGTAGACGGAAATTTGTAAAA
TCGCTCGATTTTTTTAGTCAAAGCACTTGTTATGCATTTTTGGAAAGTTA
GGTACTGAAATCACCTATACTCGCAATATATCTCTAATCTTGATTTTTTG
AGAGCTTTCCAAAAGTATATAACAGGTTTCCGTTTTCTCAAGCCAAAATT
TTCATAAATTTTTGACCCTATGATTTTTGCCTGAGATCGTCACACAAAAT
CGCACAAAGTGTCCGAAATAAAATTGGCAACCAAGTTATTTTGATTCCCC
TACCCCTTAGCCTTCCAAAACTTTATAACAAATGCTTTGACTAAAAAAAT
TGAGCGACCTCAAAAAAACGAACAAATTTCCCCCTACTATTAGGTTTTCA
TGAGGTTTTACATTTTATTCGATCTCTTTCAGAAAATTGAAACCGGTCGG
CTTGAACGAAACTAAATCTCAAGAAGTTGATACCTTAATGTTTCCCTCAC
TGCGTAAAATTCAGAAATTATGTTTGAAATATGGATATCCTAAACCCCCA
TGCACACCTGAGAAGAAAATTGTTTGCTACTCAAGCGGCAATCAGATCTA
TGTTCAGAAATGCTCTGTGGAAGTGAGTGAAACCGAACGATGTTCCTGCA
CAAGAGATGGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028593XLOC_028593Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045002-exon-sc0006649-1575043694:1537..1583TCONS_00045002-exon-sc0006649-1575043694:1537..1583Clytia hemisphaericaexon
TCONS_00045002-exon-sc0006649-1575043694:573..801TCONS_00045002-exon-sc0006649-1575043694:573..801Clytia hemisphaericaexon
TCONS_00045002-exon-sc0006649-1510915933:1537..1583TCONS_00045002-exon-sc0006649-1510915933:1537..1583Clytia hemisphaericaexon
TCONS_00045002-exon-sc0006649-1510915933:573..801TCONS_00045002-exon-sc0006649-1510915933:573..801Clytia hemisphaericaexon
TCONS_00045002-exon-sc0006649-1491911889:1537..1583TCONS_00045002-exon-sc0006649-1491911889:1537..1583Clytia hemisphaericaexon
TCONS_00045002-exon-sc0006649-1491911889:573..801TCONS_00045002-exon-sc0006649-1491911889:573..801Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0006649supercontigsc0006649:573..1583 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.12857	3.55933	1.18078	4.62083	9.52485	10.5509	3.83429	3.3442	19.3335	18.3698	6.33933	15.2798	5.32187	6.84268	15.9886	11.6306	21.5289	23.9304	15.809	11.0205	7.05806	10.328	17.9358	16.8498	5.35551	4.9964	45.7589	58.7548	20.8348	35.379
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045002 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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