TCONS_00044999 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044999
Unique NameTCONS_00044999
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length322

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044999 ID=TCONS_00044999|Name=TCONS_00044999|organism=Clytia hemisphaerica|type=transcript|length=322bp
gtttcAGTTGCTGTCTTGTTTGTGTGACGTCATTCGTTGCTATGACTACA
GTATCATGGAAGACCTTTATACAGTAGCGTTAGAGCATGCGGATAGTGCT
CTGTGTTATGGCGCATGTCACTGTTTACTGAACAACaccaagaatttcat
taaaaatcaaaaagtgttgACAGATTCACCAGCAAAGTATTCAGAGGAGA
GACTGAGTTTGATGAAAGAAACCAACAAAGCATACGAGCGGAAAGCAATC
TGGGCTATCAAGACAATCGCGACTTTCTTACCCAATTGTCAACACAGAGA
TACTTGCAACATTGTCATTCAA
Run BLAST on NCBI

protein sequence of TCONS_00044999-protein

>TCONS_00044999-protein ID=TCONS_00044999-protein|Name=TCONS_00044999-protein|organism=Clytia hemisphaerica|type=polypeptide|length=107bp
FQLLSCLCDVIRCYDYSIMEDLYTVALEHADSALCYGACHCLLNNTKNFI
KNQKVLTDSPAKYSEERLSLMKETNKAYERKAIWAIKTIATFLPNCQHRD
TCNIVIQ
Run BLAST on NCBI

transcript from alignment at sc0006643:7..772-

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044999 ID=TCONS_00044999|Name=TCONS_00044999|organism=Clytia hemisphaerica|type=transcript|length=766bp|location=Sequence derived from alignment at sc0006643:7..772- (Clytia hemisphaerica)
GTTTCAGTTGCTGTCTTGTTTGTGTGACGTCATTCGTTGCTATGACTACA
GTATCATGGAAGACCTTTATACAGTAGCGTTAGAGCATGCGGATAGTGCT
CTGTGTTATGGCGCATGTCACTGTTTACTGAACAACACCAAGAATTTCAT
TAAAAATCAAAAAGTGTTGACAGATTCACCAGCAAAGGTTCTTTTCTCAT
TTCTTTTTTGGCTTTTTCGCTGACACCTACCGCGTGTTTCAAAGTGTACA
AGTTCGGATTATGATTGTGAGAAAACTTAAATATCATAAATCTAACTTAA
ATTTTGATCTATCATACTTTCAATTTGCTTCACGTATTCAAAATTTATGA
AGAAATTCTTCTCTTTCGAAAAAACCGTCAATCTACTTACATACACTCAA
CTCGCCATCTTATCCCTGGCGCCGTTCTTTCCGTGTAAGGATCTAATCTT
CATATCCGAAGTTATAACTGTTTAATGTTCGTGTTACGGTTTAAAAAAGT
TAAGTTCGATCCTTCTGACATGGATTTTCAGTACGTCCTCGGATAATGAA
ATCTTGAACCAAACCTTTGACTTTAACTGAAGTTTCTATTATTATCTGAG
AGCCTAAAATCTTTTGGTTTTCTATTTGCAGTATTCAGAGGAGAGACTGA
GTTTGATGAAAGAAACCAACAAAGCATACGAGCGGAAAGCAATCTGGGCT
ATCAAGACAATCGCGACTTTCTTACCCAATTGTCAACACAGAGATACTTG
CAACATTGTCATTCAA

Coding sequence (CDS) from alignment at sc0006643:7..772-

>TCONS_00044999 ID=TCONS_00044999|Name=TCONS_00044999|organism=Clytia hemisphaerica|type=CDS|length=642bp|location=Sequence derived from alignment at sc0006643:7..772- (Clytia hemisphaerica)
TATTCAGAGGAGAGACTGAGTTTGATGAAAGAAACCAACAAAGCATACGA
GCGGAAAGCAATCTGGGCTATCAAGACAATCGCGACTTTCTTACCCAATT
GTCAACACAGAGATACTTGCAACATTGTCATTCAATTTCAGTTGCTGTCT
TGTTTGTGTGACGTCATTCGTTGCTATGACTACAGTATCATGGAAGACCT
TTATACAGTAGCGTTAGAGCATGCGGATAGTGCTCTGTGTTATGGCGCAT
GTCACTGTTTACTGAACAACACCAAGAATTTCATTAAAAATCAAAAAGTG
TTGACAGATTCACCAGCAAAGTATTCAGAGGAGAGACTGAGTTTGATGAA
AGAAACCAACAAAGCATACGAGCGGAAAGCAATCTGGGCTATCAAGACAA
TCGCGACTTTCTTACCCAATTGTCAACACAGAGATACTTGCAACATTGTC
ATTCAATTTCAGTTGCTGTCTTGTTTGTGTGACGTCATTCGTTGCTATGA
CTACAGTATCATGGAAGACCTTTATACAGTAGCGTTAGAGCATGCGGATA
GTGCTCTGTGTTATGGCGCATGTCACTGTTTACTGAACAACACCAAGAAT
TTCATTAAAAATCAAAAAGTGTTGACAGATTCACCAGCAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028590XLOC_028590Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044999-proteinTCONS_00044999-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044999-exon-sc0006643-1575043694:586..772TCONS_00044999-exon-sc0006643-1575043694:586..772Clytia hemisphaericaexon
TCONS_00044999-exon-sc0006643-1575043694:7..141TCONS_00044999-exon-sc0006643-1575043694:7..141Clytia hemisphaericaexon
TCONS_00044999-exon-sc0006643-1510915933:586..772TCONS_00044999-exon-sc0006643-1510915933:586..772Clytia hemisphaericaexon
TCONS_00044999-exon-sc0006643-1510915933:7..141TCONS_00044999-exon-sc0006643-1510915933:7..141Clytia hemisphaericaexon
TCONS_00044999-exon-sc0006643-1491911889:586..772TCONS_00044999-exon-sc0006643-1491911889:586..772Clytia hemisphaericaexon
TCONS_00044999-exon-sc0006643-1491911889:7..141TCONS_00044999-exon-sc0006643-1491911889:7..141Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0006643supercontigsc0006643:7..772 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.7672	4.89815	0.710902	0.347753	11.4306	11.0399	10.0903	10.2021	8.72999	10.4858	7.31529	6.69048	7.30754	3.25241	5.70437	6.31296	4.00636	7.00502	3.67089	6.98423	4.24939	6.21812	5.75919	6.54492	24.268	15.6423	6.0265	7.35045	8.36259	6.03511
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044999 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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